Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 1.2e-145 520.0 294 100.0
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 3.3e-79 299.3 274 67.5
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.1e-74 284.3 296 61.5
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 2.5e-63 246.5 280 52.9
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 2.1e-62 243.4 296 51.4
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 3.5e-57 226.1 285 49.5
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 1.0e-56 224.6 285 49.1
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 1.3e-56 224.2 278 50.0
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 3.9e-56 222.6 278 50.4
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.4e-53 214.2 288 45.1
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 1.8e-53 213.8 268 53.0
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 2.6e-52 209.9 300 46.7
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 7.6e-52 208.4 345 40.6
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.9e-51 206.5 288 49.3
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 1.1e-50 204.5 294 53.1
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 1.9e-50 203.8 296 47.0
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 3.5e-49 199.5 289 43.6
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 1.3e-48 197.6 274 50.0
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 1.8e-48 197.2 274 55.1
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 2.5e-47 193.4 276 45.3
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 3.3e-47 193.0 293 41.6
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.3e-46 191.0 292 45.2
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.6e-46 190.7 288 49.0
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 1.6e-46 190.7 290 43.8
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 2.1e-46 190.3 294 44.2
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 3.7e-46 189.5 268 44.8
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.8e-46 189.1 296 45.9
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 6.2e-46 188.7 275 45.5
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 6.2e-46 188.7 288 49.7
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 1.4e-45 187.6 307 41.7
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 2.4e-45 186.8 257 47.9
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 2.4e-45 186.8 290 44.8
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 3.1e-45 186.4 290 41.4
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 6.9e-45 185.3 273 50.9
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 1.5e-44 184.1 289 43.3
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.0e-44 183.7 281 44.1
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 3.4e-44 183.0 271 43.5
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.5e-44 182.6 296 48.6
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 4.5e-44 182.6 291 45.4
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 5.8e-44 182.2 283 45.2
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 3.8e-43 179.5 276 51.1
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 3.2e-42 176.4 278 44.6
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 3.2e-42 176.4 292 49.7
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 3.2e-42 176.4 288 44.1
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 7.1e-42 175.3 305 40.7
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 7.1e-42 175.3 278 42.8
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 1.2e-41 174.5 274 44.9
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.6e-41 174.1 168 57.7
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 2.1e-41 173.7 300 39.7
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 4.6e-41 172.6 191 48.7
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.9e-40 169.5 296 44.6
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 8.7e-40 168.3 298 38.9
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 1.1e-39 167.9 287 40.1
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.3e-39 166.4 387 34.6
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.3e-38 164.5 354 38.1
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 1.6e-38 164.1 289 40.1
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 8.2e-38 161.8 269 47.6
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 8.2e-38 161.8 292 39.0
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 2.4e-37 160.2 287 42.5
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 4.1e-37 159.5 302 42.7
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 6.9e-37 158.7 271 48.0
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 6.9e-37 158.7 287 40.8
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 1.2e-36 157.9 290 37.2
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 1.5e-36 157.5 297 37.4
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 1.7e-35 154.1 256 40.2
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 2.2e-35 153.7 272 45.2
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 2.9e-35 153.3 198 44.9
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 5.0e-35 152.5 269 47.6
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 1.4e-34 151.0 281 40.2
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 2.5e-34 150.2 274 40.1
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 2.5e-34 150.2 289 39.8
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 1.0e-32 144.8 284 36.3
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 5.1e-32 142.5 305 40.3
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 6.7e-32 142.1 288 46.2
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.1e-31 141.4 322 35.4
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.1e-31 141.4 282 37.6
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 1.5e-31 141.0 163 50.9
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 2.5e-31 140.2 270 38.1
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 2.2e-30 137.1 181 45.3
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 6.3e-30 135.6 287 35.2
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 6.3e-30 135.6 163 45.4
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 1.4e-29 134.4 283 35.0
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 4.1e-29 132.9 274 40.9
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 4.1e-29 132.9 269 37.5
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 4.1e-29 132.9 316 32.6
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 9.1e-29 131.7 283 32.2
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 9.1e-29 131.7 325 30.5
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 2.0e-28 130.6 288 34.7
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.5e-26 123.6 79 72.2
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 2.7e-25 120.2 275 37.1
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.3e-24 117.1 216 43.5
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 2.3e-24 117.1 309 29.4
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 3.3e-23 113.2 284 38.4
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 1.7e-22 110.9 290 33.8
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 6.3e-22 109.0 87 56.3
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 6.3e-22 109.0 87 56.3
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 5.3e-21 105.9 302 32.1
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 5.3e-21 105.9 302 32.1
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 3.4e-20 103.2 302 31.8
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 2.7e-17 93.6 58 67.2
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 2.7e-17 93.6 179 38.0
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 8.8e-16 88.6 291 29.6
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 2.4e-13 80.5 58 58.6
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 2.2e-11 73.9 169 31.4
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 2.5e-10 70.5 151 33.1
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 3.0e-08 63.5 108 35.2


User provided reference genes

Program Settings