Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.3e-120 436.4 217 100.0
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 3.5e-94 348.6 217 80.2
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 2.3e-90 335.9 218 77.5
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 2.6e-89 332.4 217 76.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 4.9e-88 328.2 214 75.7
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 4.9e-88 328.2 214 75.7
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 4.9e-88 328.2 217 75.6
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 8.3e-88 327.4 213 77.0
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 2.4e-87 325.9 213 77.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 2.0e-86 322.8 206 76.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 5.9e-86 321.2 217 75.1
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 2.3e-85 319.3 225 72.4
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 8.6e-85 317.4 206 75.7
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.1e-84 317.0 188 79.8
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.5e-84 316.6 197 78.7
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.5e-84 316.6 217 74.2
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.5e-84 316.6 214 72.0
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 2.5e-84 315.8 197 77.2
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 2.8e-83 312.4 196 75.5
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 2.8e-83 312.4 206 74.8
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 4.7e-83 311.6 220 72.3
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 4.7e-83 311.6 198 75.8
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.2e-83 311.2 206 73.8
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 8.0e-83 310.8 223 71.7
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.0e-82 310.5 217 71.0
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.0e-82 310.5 218 72.0
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.1e-82 308.9 223 71.7
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 6.8e-82 307.8 198 75.3
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 8.9e-82 307.4 214 72.0
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.2e-81 307.0 217 70.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.5e-81 306.6 207 72.9
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 2.0e-81 306.2 222 72.1
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.6e-81 305.8 211 70.1
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 3.4e-81 305.4 188 76.1
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.4e-81 305.1 189 77.2
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 7.5e-81 304.3 217 69.6
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.2e-80 302.8 223 69.5
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.9e-80 302.4 208 71.6
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.4e-79 300.1 194 73.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 5.4e-79 298.1 219 67.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.2e-78 297.0 221 67.9
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.2e-78 297.0 211 71.6
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.2e-78 297.0 203 74.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 2.7e-78 295.8 203 73.4
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 3.5e-78 295.4 230 67.0
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 6.0e-78 294.7 188 73.4
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 6.0e-78 294.7 221 67.4
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 7.8e-78 294.3 200 72.0
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 7.8e-78 294.3 203 72.9
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.3e-77 293.5 200 71.0
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 3.9e-77 292.0 224 67.0
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 5.0e-77 291.6 217 69.6
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 6.6e-77 291.2 201 71.6
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 6.6e-77 291.2 200 71.5
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 6.6e-77 291.2 200 71.5
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 6.6e-77 291.2 212 70.3
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 8.6e-77 290.8 184 76.1
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.1e-76 290.4 218 68.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.1e-76 290.4 197 71.6
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.9e-76 289.7 196 72.4
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 2.5e-76 289.3 187 72.2
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-76 289.3 200 71.0
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.5e-76 289.3 200 71.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 3.3e-76 288.9 201 69.2
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 9.5e-76 287.3 228 64.0
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 2.1e-75 286.2 213 68.5
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 8.1e-75 284.3 208 68.3
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 5.2e-74 281.6 211 68.2
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.5e-73 280.0 223 66.8
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.0e-73 279.6 190 72.6
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.0e-73 279.6 227 66.1
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 5.8e-73 278.1 206 67.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 7.5e-73 277.7 204 68.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 3.5e-70 268.9 177 72.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.7e-69 266.5 212 67.5
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.3e-69 266.2 206 67.5
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 3.0e-69 265.8 217 66.4
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 5.1e-69 265.0 242 58.7
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.5e-68 262.7 202 63.4
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 5.2e-66 255.0 141 84.4
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 6.8e-66 254.6 183 71.0
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 2.0e-65 253.1 144 79.9
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.6e-65 252.7 168 73.8
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 9.9e-65 250.8 141 84.4
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.4e-63 246.1 171 71.3
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 3.2e-63 245.7 167 74.3
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.2e-62 243.8 197 61.4
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 9.6e-60 234.2 218 57.8
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.8e-59 232.6 215 57.2
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.1e-58 230.7 179 63.7
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 4.4e-57 225.3 170 62.9
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 4.4e-57 225.3 164 65.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.3e-56 223.8 173 60.1
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.4e-56 221.5 173 59.5
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 4.6e-54 215.3 171 66.1
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.1e-51 206.5 162 68.5
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 5.3e-50 201.8 166 66.9
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.6e-46 190.3 144 69.4
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-38 164.1 123 62.6
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.6e-38 163.7 214 46.7
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 2.7e-38 162.9 183 48.1
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 3.0e-37 159.5 180 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.8e-35 152.9 137 56.2
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 3.1e-34 149.4 233 39.5
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 4.5e-33 145.6 86 74.4
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.3e-32 144.1 86 73.3
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 3.8e-32 142.5 170 45.3
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.0e-24 117.9 97 64.9
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.3e-24 117.5 177 40.7
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.2e-23 112.8 55 83.6
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.9e-22 108.2 119 55.5
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 3.9e-21 105.9 83 63.9
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.2e-17 94.4 82 56.1
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.1e-15 87.8 62 67.7
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.1e-14 83.6 74 62.2
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 3.6e-14 82.8 64 65.6
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 3.3e-12 76.3 85 52.9
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.6e-09 66.6 34 82.4
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 5.0e-08 62.4 143 29.4
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 6.5e-08 62.0 195 28.7
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 6.5e-08 62.0 143 29.4
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.9e-07 60.5 194 30.4
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.5e-07 60.1 143 28.7
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 5.5e-07 58.9 143 27.3
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 7.2e-07 58.5 145 27.6
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 7.2e-07 58.5 33 75.8
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 2.1e-06 57.0 142 28.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 2.7e-06 56.6 193 24.9
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 4.7e-06 55.8 143 28.7
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 4.7e-06 55.8 128 32.0
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 7.9e-06 55.1 109 27.5


User provided reference genes

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