Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 2.8e-247 858.2 451 100.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.6e-188 661.0 450 80.0
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.2e-176 623.6 480 73.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 4.3e-171 605.1 459 72.8
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.4e-169 599.4 458 72.5
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.0e-168 596.3 416 77.2
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 4.4e-168 595.1 395 80.8
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 7.6e-168 594.3 453 71.3
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 1.6e-165 586.6 453 70.9
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-163 580.5 455 69.9
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.9e-163 579.7 450 71.1
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.5e-163 579.3 461 70.3
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 9.6e-163 577.4 448 69.4
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 9.0e-161 570.9 457 68.5
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 9.0e-161 570.9 455 69.9
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.5e-160 570.1 367 79.8
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.5e-160 570.1 461 68.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 7.6e-160 567.8 452 70.4
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 9.9e-160 567.4 457 68.3
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.3e-159 567.0 453 68.4
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.7e-159 566.6 449 71.3
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.9e-159 565.8 452 70.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.4e-158 563.5 465 67.7
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.4e-158 562.8 459 70.6
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.2e-158 562.4 454 69.6
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 3.2e-158 562.4 461 69.0
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 3.2e-158 562.4 462 68.2
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.4e-158 561.6 466 68.9
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.6e-157 560.1 409 74.1
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.6e-157 560.1 461 70.5
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.6e-157 560.1 455 67.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.5e-157 558.9 458 68.6
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 3.5e-157 558.9 458 70.1
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.0e-156 557.4 467 68.1
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.0e-156 557.4 461 70.3
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 1.7e-156 556.6 477 66.2
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.7e-156 556.6 467 67.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 6.6e-156 554.7 462 67.5
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 8.7e-156 554.3 432 69.4
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 2.5e-155 552.7 452 68.1
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 9.6e-155 550.8 488 65.2
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 6.2e-154 548.1 450 65.8
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 8.1e-154 547.7 450 68.4
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 8.1e-154 547.7 450 65.8
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.4e-153 547.0 377 74.8
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 2.6e-152 542.7 450 67.1
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 9.9e-152 540.8 462 67.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 3.8e-151 538.9 453 67.5
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 1.4e-150 537.0 519 60.1
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.4e-150 536.2 458 65.9
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 2.4e-150 536.2 391 72.9
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 3.2e-150 535.8 452 65.7
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 9.3e-150 534.3 481 62.8
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 6.0e-149 531.6 383 74.2
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 7.9e-149 531.2 447 65.5
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.0e-148 530.8 456 64.3
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.0e-148 530.8 382 74.3
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 3.0e-148 529.3 386 73.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.9e-147 526.6 455 64.6
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.9e-147 526.6 421 69.4
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 2.5e-147 526.2 382 73.8
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.3e-147 525.8 459 63.8
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 7.4e-147 524.6 453 65.6
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.2e-144 517.3 452 64.4
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.0e-144 516.5 459 61.4
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 3.8e-143 512.3 454 63.2
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 6.4e-143 511.5 453 63.6
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 3.2e-142 509.2 380 71.3
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 9.3e-142 507.7 447 64.4
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.2e-141 507.3 454 63.9
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 2.1e-141 506.5 369 71.8
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 6.0e-141 505.0 378 71.2
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.3e-140 503.8 377 70.6
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 2.3e-140 503.1 447 64.4
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 5.1e-140 501.9 463 60.7
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.1e-139 500.7 460 60.9
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.1e-139 500.7 339 76.7
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.5e-139 499.6 459 60.8
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 3.7e-138 495.7 475 61.1
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.4e-137 493.8 366 71.0
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 4.0e-137 492.3 460 61.3
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 5.3e-137 491.9 458 60.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.5e-136 490.3 455 60.0
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.6e-136 489.6 473 60.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 7.6e-136 488.0 477 60.2
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.0e-135 487.6 455 60.0
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 4.2e-134 482.3 454 60.4
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 9.3e-134 481.1 434 62.0
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 7.9e-133 478.0 379 65.7
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.8e-132 476.9 393 64.6
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 3.0e-132 476.1 454 58.8
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.7e-131 471.9 453 60.5
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 3.1e-129 466.1 357 68.6
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 3.1e-129 466.1 357 68.6
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.0e-127 461.1 463 60.5
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 1.7e-127 460.3 362 66.6
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 7.2e-126 454.9 352 68.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 3.0e-124 449.5 454 57.3
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.5e-123 446.4 379 63.3
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-121 441.0 310 73.5
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.8e-121 440.3 350 66.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.8e-121 440.3 340 67.4
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.0e-120 436.8 343 66.5
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 2.7e-117 426.4 337 67.4
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.3e-116 423.3 330 71.8
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 1.7e-114 417.2 350 67.7
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 2.0e-107 393.7 307 63.8
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 7.4e-107 391.7 295 73.6
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.4e-105 387.5 323 68.1
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 3.8e-103 379.4 357 54.9
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.1e-97 359.8 350 53.4
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 2.0e-96 357.1 368 53.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 3.0e-92 343.2 252 69.8
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.0e-88 330.5 326 52.5
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.5e-86 324.3 252 67.9
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 4.2e-86 322.8 308 57.8
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 3.0e-84 316.6 201 80.6
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 6.8e-84 315.5 261 60.5
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.3e-79 301.2 347 55.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 4.9e-74 282.7 288 52.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 3.6e-69 266.5 351 43.9
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 3.4e-67 260.0 283 49.1
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 2.2e-66 257.3 193 66.8
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 6.4e-66 255.8 170 74.7
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 6.4e-66 255.8 295 50.8
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.4e-65 254.6 295 50.2
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 2.7e-56 223.8 247 53.8
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.3e-50 204.9 206 63.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.6e-48 196.4 214 53.7
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.3e-39 167.5 296 39.9
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 6.4e-34 149.4 121 66.1
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.7e-29 133.7 83 78.3
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.4e-28 131.7 84 77.4
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 4.9e-26 123.2 76 73.7
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-25 121.7 72 83.3
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 2.3e-23 114.4 72 79.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.8e-20 104.8 58 82.8
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 2.8e-13 80.9 100 49.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.8e-12 78.2 61 63.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 4.1e-12 77.0 85 56.5


User provided reference genes

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