Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 2.5e-40 168.3 85 100.0
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 6.2e-23 110.5 85 68.2
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 2.4e-22 108.6 82 70.7
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 2.1e-18 95.5 85 63.5
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 6.7e-17 90.5 78 62.8
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 1.5e-16 89.4 85 61.2
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 2.5e-16 88.6 84 53.6
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 7.4e-16 87.0 85 58.8
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.4e-16 87.0 85 58.8
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.4e-16 87.0 85 58.8
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 7.4e-16 87.0 85 58.8
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 9.7e-16 86.7 82 53.7
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 1.6e-15 85.9 87 54.0
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 1.6e-15 85.9 85 60.0
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 1.6e-15 85.9 85 55.3
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 2.2e-15 85.5 85 52.9
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 2.2e-15 85.5 83 59.0
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.8e-15 85.1 85 57.6
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 4.8e-15 84.3 81 53.1
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 4.8e-15 84.3 85 50.6
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 6.3e-15 84.0 85 55.3
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 8.2e-15 83.6 83 54.2
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 1.4e-14 82.8 85 54.1
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.4e-14 82.8 71 63.4
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 1.8e-14 82.4 85 56.5
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 4.1e-14 81.3 85 54.1
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.2e-13 79.7 85 54.1
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 4.5e-13 77.8 71 62.0
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 5.9e-13 77.4 97 54.6
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 1.0e-12 76.6 68 58.8
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 2.2e-12 75.5 96 54.2
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 2.9e-12 75.1 88 51.1
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 2.9e-12 75.1 96 49.0
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 2.9e-12 75.1 80 57.5
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 6.5e-12 73.9 80 56.2
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 8.5e-12 73.6 81 51.9
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 1.1e-11 73.2 80 56.2
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.1e-11 73.2 69 55.1
Prupe.2G109900 Prunus persica HOM05D007785 ORTHO05D008997 1.9e-11 72.4 87 54.0
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 9.4e-11 70.1 81 50.6
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 9.4e-11 70.1 85 47.1
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 1.6e-10 69.3 85 44.7
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 1.6e-10 69.3 79 45.6
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 1.6e-10 69.3 74 59.5
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 4.6e-10 67.8 72 52.8
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 6.1e-10 67.4 77 51.9
Gohir.A03G002300 Gossypium hirsutum HOM05D012518 ORTHO05D008997 6.1e-10 67.4 77 50.6
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 7.9e-10 67.0 85 45.9
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 7.9e-10 67.0 77 53.2
Thecc.03G232200 Theobroma cacao HOM05D012518 ORTHO05D008997 7.9e-10 67.0 77 50.6
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 1.8e-09 65.9 77 49.4
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 2.3e-09 65.5 77 46.8
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 3.0e-09 65.1 81 44.4
Gohir.D09G192932 Gossypium hirsutum HOM05D012518 ORTHO05D008997 3.0e-09 65.1 78 52.6
Potri.003G089100 Populus trichocarpa HOM05D007785 ORTHO05D008997 3.0e-09 65.1 75 45.3
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 3.9e-09 64.7 76 46.1
Sed0016926 Sechium edule HOM05D007785 ORTHO05D008997 3.9e-09 64.7 95 46.3
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.1e-08 63.2 85 48.2
Gohir.A09G198400 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.9e-08 62.4 73 53.4
Gohir.D03G170000 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.9e-08 62.4 77 48.1
Gorai.003G180300 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.9e-08 62.4 77 48.1
Gorai.006G216000 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.9e-08 62.4 78 51.3
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.9e-08 62.4 71 50.7
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 2.5e-08 62.0 80 43.8
Prupe.2G110100 Prunus persica HOM05D007785 ORTHO05D008997 2.5e-08 62.0 73 54.8
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 2.5e-08 62.0 85 47.1
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 2.5e-08 62.0 96 45.8
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 3.3e-08 61.6 72 47.2
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 4.3e-08 61.2 73 47.9
Phvul.002G005800 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 4.3e-08 61.2 71 50.7
Ciclev10033202m.g Citrus clementina HOM05D007785 ORTHO05D008997 5.7e-08 60.8 75 49.3
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 5.7e-08 60.8 71 49.3
Gohir.A08G158700 Gossypium hirsutum HOM05D012518 ORTHO05D008997 7.4e-08 60.5 71 52.1
Gohir.D08G179100 Gossypium hirsutum HOM05D012518 ORTHO05D008997 7.4e-08 60.5 77 48.1
DCAR_029543 Daucus carota HOM05D007785 ORTHO05D008997 9.7e-08 60.1 79 45.6
Oeu024374.1 Olea europaea HOM05D007785 ORTHO05D008997 9.7e-08 60.1 92 40.2
arahy.Tifrunner.gnm1.ann1.TXA0XA Arachis hypogaea HOM05D007785 ORTHO05D008997 1.7e-07 59.3 71 46.5
arahy.Tifrunner.gnm1.ann1.XHE4AQ Arachis hypogaea HOM05D007785 ORTHO05D008997 1.7e-07 59.3 71 46.5
Glyma.05G113700 Glycine max HOM05D007785 ORTHO05D008997 2.2e-07 58.9 71 52.1
Glyma.11G042100 Glycine max HOM05D007785 ORTHO05D008997 2.2e-07 58.9 71 49.3
BcaB03g13730 Brassica carinata HOM05D010231 ORTHO05D012284 3.7e-07 58.2 79 48.1
BcaC05g27853 Brassica carinata HOM05D010231 ORTHO05D012284 3.7e-07 58.2 78 47.4
BolC5t32585H Brassica oleracea HOM05D010231 ORTHO05D012284 3.7e-07 58.2 78 47.4
Gorai.004G187600 Gossypium raimondii HOM05D012518 ORTHO05D008997 3.7e-07 58.2 71 49.3
A05p24820 Brassica napus HOM05D010231 ORTHO05D012284 1.1e-06 56.6 68 48.5
C05p31910 Brassica napus HOM05D010231 ORTHO05D012284 1.1e-06 56.6 65 47.7
BraA05t21365Z Brassica rapa HOM05D010231 ORTHO05D012284 1.1e-06 56.6 68 48.5
Glyma.17G153500 Glycine max HOM05D007785 ORTHO05D008997 1.8e-06 55.8 72 48.6
BcaC05g27283 Brassica carinata HOM05D010231 ORTHO05D012284 2.4e-06 55.5 65 46.2
Phvul.003G229200 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 3.1e-06 55.1 60 55.0
Hund17152 Selenicereus undatus HOM05D034151 ORTHO05D034346 3.1e-06 55.1 87 46.0
Dinv28928 Davidia involucrata HOM05D007785 ORTHO05D008997 5.3e-06 54.3 84 46.4
VMungo0251G2587 Vigna mungo HOM05D007785 ORTHO05D008997 5.3e-06 54.3 60 51.7
BolC5t31918H Brassica oleracea HOM05D010231 ORTHO05D012284 6.9e-06 53.9 65 46.2
Lj4g0027032 Lotus japonicus HOM05D007785 ORTHO05D008997 6.9e-06 53.9 72 47.2
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 6.9e-06 53.9 72 43.1
Hund11261 Selenicereus undatus HOM05D018059 ORTHO05D008997 6.9e-06 53.9 73 46.6
Gohir.A09G198600 Gossypium hirsutum HOM05D012518 ORTHO05D008997 9.1e-06 53.5 67 53.7
THA.LOC104807966 Tarenaya hassleriana HOM05D010231 ORTHO05D012284 9.1e-06 53.5 77 45.5


User provided reference genes

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