Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.8e-252 874.8 437 100.0
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.4e-195 686.4 434 77.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 7.8e-194 680.6 436 76.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 7.8e-194 680.6 432 76.6
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 4.3e-192 674.9 422 77.7
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.8e-190 669.5 437 75.3
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.8e-190 669.5 437 75.3
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.1e-190 668.7 433 75.5
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 5.2e-190 667.9 433 75.5
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.6e-189 665.6 433 74.8
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 4.4e-189 664.8 437 76.0
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 5.8e-189 664.5 436 74.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.7e-188 662.9 428 79.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.7e-188 661.8 422 76.5
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-187 660.2 439 75.2
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-187 660.2 439 75.2
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.0e-187 657.5 439 74.3
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 7.8e-186 654.1 476 69.5
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 7.8e-186 654.1 437 73.5
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.0e-185 653.7 429 73.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.3e-185 653.3 439 73.8
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.3e-185 653.3 437 74.1
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.3e-185 652.5 437 73.5
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 6.6e-185 651.0 437 73.7
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-184 649.4 438 73.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.5e-184 649.0 436 72.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.5e-184 649.0 443 72.7
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.3e-184 648.7 437 72.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 7.3e-184 647.5 439 72.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 7.3e-184 647.5 438 71.9
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.1e-183 646.0 421 72.7
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 6.2e-183 644.4 439 72.7
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.8e-182 642.9 437 73.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.3e-182 642.5 436 71.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 2.3e-182 642.5 436 71.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 4.0e-182 641.7 437 71.6
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 2.0e-181 639.4 436 71.8
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.7e-180 636.3 435 72.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.7e-180 636.3 436 71.1
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 6.4e-180 634.4 436 70.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 6.4e-180 634.4 433 72.1
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.1e-179 633.6 437 71.9
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.9e-179 632.9 438 70.5
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 4.1e-179 631.7 439 70.6
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 5.4e-179 631.3 454 68.1
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 5.4e-179 631.3 430 71.6
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 5.4e-179 631.3 434 70.3
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 7.1e-179 630.9 446 69.7
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 9.2e-179 630.6 434 71.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 2.1e-178 629.4 469 69.5
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.1e-178 629.4 426 72.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.0e-178 627.9 435 70.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.0e-178 627.9 433 69.7
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.7e-177 626.3 406 76.1
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.0e-177 625.5 434 71.2
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.9e-177 625.2 440 69.5
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 6.6e-177 624.4 434 71.4
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 6.6e-177 624.4 424 71.9
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.6e-177 624.4 433 69.7
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.6e-177 624.0 439 69.9
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.1e-176 623.6 438 70.1
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-176 622.9 435 69.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.5e-176 622.5 431 69.8
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.5e-176 622.5 436 70.6
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 5.6e-176 621.3 440 69.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.3e-176 620.9 435 69.2
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 7.3e-176 620.9 446 68.6
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 2.1e-175 619.4 434 70.7
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 6.2e-175 617.8 434 71.2
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 8.1e-175 617.5 439 69.2
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 6.8e-174 614.4 434 72.4
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.4e-173 612.1 438 70.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.4e-173 611.7 501 62.9
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 6.4e-172 607.8 423 70.4
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.9e-171 606.3 438 68.7
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.7e-170 602.4 437 68.4
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.7e-170 602.4 481 64.0
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.9e-168 596.3 433 69.1
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 4.0e-166 588.6 402 71.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 3.4e-165 585.5 334 86.8
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 4.9e-164 581.6 406 72.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.9e-160 569.7 432 63.4
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.0e-157 559.7 425 66.6
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.6e-157 559.3 375 70.9
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 9.9e-157 557.4 413 67.8
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.8e-156 555.4 425 66.6
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.3e-153 547.0 435 63.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 5.1e-153 545.0 457 62.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 2.4e-150 536.2 437 63.4
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.7e-144 515.0 390 64.4
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.6e-143 513.5 335 75.5
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.7e-143 512.3 333 76.0
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 8.2e-143 511.1 432 60.9
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 5.8e-141 505.0 409 64.8
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.1e-137 491.9 342 72.8
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 3.3e-136 489.2 342 71.9
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 3.1e-134 482.6 416 56.0
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 5.3e-134 481.9 364 63.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 5.3e-134 481.9 441 55.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.7e-133 478.0 417 60.0
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.0e-132 477.6 369 63.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.0e-129 467.6 334 67.4
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 2.8e-127 459.5 344 68.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.1e-126 457.6 450 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.3e-124 450.7 419 54.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 9.4e-123 444.5 420 52.9
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.8e-119 433.0 407 54.1
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-115 420.6 437 53.5
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.9e-115 420.2 312 66.3
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.5e-108 394.8 342 61.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 6.3e-103 378.6 575 37.4
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 4.1e-102 375.9 289 65.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 9.1e-102 374.8 376 56.1
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.0e-101 373.6 422 52.1
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.0e-97 361.3 280 65.0
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 9.8e-96 354.8 280 65.0
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.2e-90 337.8 270 62.2
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.9e-89 331.6 252 66.7
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.0e-85 320.5 421 44.4
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.5e-85 319.7 437 41.9
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 7.8e-85 318.5 212 70.3
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.9e-83 313.9 354 50.6
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 4.3e-83 312.8 234 65.4
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.6e-82 309.7 424 43.6
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 4.3e-75 286.2 396 43.4
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.7e-71 274.2 232 59.1
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.3e-71 271.9 152 84.9
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.0e-68 263.5 361 43.2
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 2.5e-67 260.4 472 35.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 3.3e-67 260.0 150 82.0
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 4.3e-67 259.6 150 80.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 3.1e-65 253.4 287 46.7
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.6e-64 250.4 147 81.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 8.9e-57 225.3 258 51.9
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 4.4e-56 223.0 419 35.8
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.7e-55 221.1 194 57.2
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.3e-52 210.7 421 34.0
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.9e-52 209.9 118 83.9
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.1e-52 209.5 148 71.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.9e-51 207.6 142 67.6
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.6e-50 203.4 185 59.5
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.8e-42 177.2 111 74.8
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.8e-33 147.9 92 76.1
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.8e-33 147.9 92 76.1
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 2.0e-32 144.4 128 61.7
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.3e-28 131.0 93 67.7
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.2e-24 118.6 424 25.9
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.0e-23 113.2 84 70.2
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-17 95.1 330 25.8
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 5.0e-15 86.7 124 46.0
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 2.3e-12 77.8 59 62.7
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 2.5e-11 74.3 43 69.8
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-10 72.0 50 70.0
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 3.7e-10 70.5 63 54.0
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-10 70.1 63 54.0
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-10 70.1 52 59.6
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-10 69.7 53 62.3
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-06 58.9 63 49.2


User provided reference genes

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