Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 3.0e-60 235.3 150 100.0
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 2.1e-42 176.0 150 76.0
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 9.0e-41 170.6 150 75.3
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.1e-29 132.9 150 54.7
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 3.0e-28 129.0 165 62.4
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 3.9e-28 128.6 152 55.3
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.9e-28 128.6 150 50.7
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 7.4e-27 124.4 152 54.6
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.3e-26 123.6 165 59.4
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 8.2e-26 120.9 151 53.0
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 1.4e-25 120.2 155 54.8
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 4.0e-25 118.6 149 55.0
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 4.0e-25 118.6 150 52.7
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 6.9e-25 117.9 149 50.3
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.6e-24 115.9 156 53.2
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 2.6e-24 115.9 92 73.9
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 4.5e-24 115.2 150 49.3
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 4.5e-24 115.2 137 59.9
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 7.6e-24 114.4 150 48.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 2.2e-23 112.8 154 50.0
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 6.5e-23 111.3 150 48.7
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 8.4e-23 110.9 153 57.5
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.9e-22 109.8 149 47.0
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.5e-22 109.4 149 45.6
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 4.2e-22 108.6 149 47.0
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 5.5e-22 108.2 153 49.7
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 7.1e-22 107.8 153 54.2
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 2.7e-21 105.9 156 54.5
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 2.7e-21 105.9 137 51.1
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 1.0e-20 104.0 152 46.7
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.0e-20 104.0 157 48.4
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 1.8e-20 103.2 149 44.3
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 6.7e-20 101.3 109 52.3
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 6.7e-20 101.3 109 52.3
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 8.7e-20 100.9 148 50.0
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 4.3e-19 98.6 106 51.9
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 5.7e-19 98.2 135 45.2
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.6e-18 96.7 121 47.9
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.8e-18 95.9 115 47.0
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 1.4e-17 93.6 148 43.9
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.4e-17 93.6 81 65.4
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.1e-17 92.0 152 42.8
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 6.9e-17 91.3 107 49.5
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 6.9e-17 91.3 139 43.2
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.2e-16 90.5 101 52.5
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.5e-16 90.1 106 59.4
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.0e-16 89.7 144 41.7
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 2.0e-16 89.7 148 45.3
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 3.4e-16 89.0 155 40.0
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 4.5e-16 88.6 124 50.0
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 5.9e-16 88.2 109 50.5
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 5.9e-16 88.2 109 50.5
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 1.0e-15 87.4 152 53.3
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 1.0e-15 87.4 107 48.6
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.0e-15 87.4 101 66.3
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.0e-15 87.4 101 63.4
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 1.0e-15 87.4 101 63.4
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 1.7e-15 86.7 115 44.3
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 1.7e-15 86.7 152 41.4
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 2.2e-15 86.3 140 42.9
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 2.2e-15 86.3 106 47.2
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.2e-15 86.3 102 49.0
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 2.2e-15 86.3 148 43.2
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 2.9e-15 85.9 109 48.6
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 2.9e-15 85.9 109 48.6
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 5.0e-15 85.1 161 41.0
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 5.0e-15 85.1 144 41.7
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 6.5e-15 84.7 155 43.2
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 6.5e-15 84.7 155 40.0
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 6.5e-15 84.7 114 45.6
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 8.5e-15 84.3 105 50.5
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.1e-14 84.0 106 48.1
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.1e-14 84.0 106 48.1
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.4e-14 83.6 117 45.3
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.9e-14 83.2 154 42.2
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.9e-14 83.2 146 42.5
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 2.5e-14 82.8 149 40.3
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 2.5e-14 82.8 150 41.3
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.2e-14 82.4 106 47.2
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.2e-14 82.4 106 47.2
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-14 82.4 152 40.8
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 5.5e-14 81.6 106 66.0
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 7.2e-14 81.3 148 39.9
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 9.3e-14 80.9 148 39.9
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 1.6e-13 80.1 111 61.3
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.6e-13 80.1 103 46.6
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 1.6e-13 80.1 165 38.8
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 2.7e-13 79.3 199 33.2
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 4.6e-13 78.6 99 50.5
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 3.9e-12 75.5 137 40.9
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 8.8e-12 74.3 115 58.3
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 2.5e-11 72.8 135 43.0
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.3e-11 72.0 62 59.7
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 7.4e-11 71.2 97 49.5
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.3e-10 70.5 87 46.0
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 3.7e-10 68.9 148 36.5
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 3.1e-09 65.9 132 47.7
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 5.3e-09 65.1 140 46.4
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 2.6e-08 62.8 153 35.9
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 1.0e-07 60.8 94 44.7
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 1.1e-06 57.4 118 52.5
Potri.003G203300 Populus trichocarpa HOM05D007435 ORTHO05D009338 2.5e-06 56.2 100 60.0
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 4.2e-06 55.5 81 39.5
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 5.5e-06 55.1 90 45.6


User provided reference genes

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