Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.1e-169 597.4 308 100.0
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.3e-114 415.2 311 70.4
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.3e-114 415.2 311 70.1
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 1.5e-111 406.8 321 67.0
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 6.4e-110 401.4 314 67.5
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.4e-85 320.5 310 55.2
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 5.5e-85 318.5 300 59.7
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 2.7e-84 316.2 313 55.9
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 7.9e-84 314.7 307 55.7
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 2.3e-83 313.2 311 52.1
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 3.9e-83 312.4 313 54.0
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.8e-80 303.5 305 54.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 3.1e-80 302.8 315 55.2
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.1e-77 294.3 315 51.1
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 7.2e-77 291.6 297 53.5
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 7.2e-77 291.6 314 51.0
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.2e-76 290.8 309 54.7
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.8e-75 287.0 328 50.6
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 3.9e-75 285.8 319 51.1
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 7.4e-74 281.6 308 51.3
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 3.7e-73 279.3 313 48.2
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 2.4e-72 276.6 308 50.3
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 9.1e-72 274.6 314 50.6
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.2e-71 274.2 334 48.2
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.7e-71 271.6 314 49.7
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 7.7e-71 271.6 312 51.0
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 2.2e-70 270.0 317 48.3
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.2e-70 270.0 317 48.3
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.9e-70 269.6 318 49.7
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 1.1e-69 267.7 320 50.0
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 3.2e-69 266.2 303 48.2
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 4.2e-69 265.8 311 51.8
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 5.5e-69 265.4 323 47.1
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.6e-68 263.8 308 46.1
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 2.1e-68 263.5 303 49.5
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.7e-68 263.1 318 48.4
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 4.7e-68 262.3 311 48.6
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.0e-67 261.2 288 51.0
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 1.0e-67 261.2 311 48.2
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 6.7e-67 258.5 315 48.9
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 2.6e-66 256.5 316 43.7
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 2.6e-66 256.5 321 49.5
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 3.3e-66 256.1 316 47.2
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 3.3e-66 256.1 314 45.5
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 5.7e-66 255.4 316 48.1
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 3.7e-65 252.7 317 47.9
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 6.3e-65 251.9 317 49.5
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.4e-64 250.8 299 47.8
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.8e-64 250.4 308 46.4
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 2.9e-62 243.0 314 46.5
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.8e-62 242.7 308 46.1
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 5.0e-62 242.3 312 46.5
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 6.5e-62 241.9 340 44.7
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.4e-61 240.7 279 49.8
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.9e-61 240.4 317 45.7
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 3.2e-61 239.6 305 46.9
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 8.0e-60 235.0 316 45.9
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 3.0e-59 233.0 315 46.0
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 3.9e-59 232.6 302 46.7
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 3.3e-58 229.6 309 45.3
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.3e-57 227.6 306 46.1
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 3.7e-57 226.1 282 47.2
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 1.1e-56 224.6 289 47.8
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 4.1e-56 222.6 305 44.3
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.2e-55 221.1 315 43.5
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.0e-54 218.0 313 43.8
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 3.8e-54 216.1 301 43.2
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.5e-54 215.3 312 44.6
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 8.5e-54 214.9 301 44.5
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.9e-53 213.8 299 41.5
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.9e-53 213.8 299 41.5
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 5.5e-53 212.2 315 42.2
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.2e-52 211.1 293 43.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.6e-52 210.7 288 43.1
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.7e-49 200.7 232 47.8
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 3.7e-49 199.5 297 38.0
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 7.0e-48 195.3 310 40.6
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 7.0e-48 195.3 285 41.1
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 9.1e-48 194.9 282 40.1
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 9.1e-48 194.9 294 40.5
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 9.1e-48 194.9 309 37.9
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.6e-47 194.1 303 38.6
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 6.5e-46 188.7 298 39.6
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.5e-45 187.6 225 47.1
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 9.4e-45 184.9 285 39.3
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 9.4e-45 184.9 301 38.9
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 3.0e-43 179.9 307 36.5
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 8.8e-43 178.3 307 38.8
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 8.8e-43 178.3 306 39.2
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.8e-40 170.6 274 38.0
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 4.1e-40 169.5 306 36.9
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.9e-38 163.3 308 37.0
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 8.0e-36 155.2 310 31.6
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 1.0e-35 154.8 303 38.3
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 4.0e-35 152.9 317 32.8
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 1.6e-31 141.0 304 33.9
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 3.9e-30 136.3 345 33.0
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.5e-29 134.4 315 33.0
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 5.6e-29 132.5 292 33.9
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.6e-28 131.0 290 33.4
CiPaw.08G144600 Carya illinoinensis HOM05D007109 ORTHO05D008813 8.0e-28 128.6 81 86.4
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.9e-25 119.4 126 50.0
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 5.0e-22 109.4 127 47.2
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-21 108.2 188 35.6
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-21 108.2 188 35.6
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.3e-17 94.7 152 34.9
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 2.1e-15 87.4 106 49.1
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 3.0e-14 83.6 328 25.3
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 1.9e-13 80.9 306 24.2
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 5.6e-13 79.3 125 40.0
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 7.3e-13 79.0 310 23.2
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.2e-12 78.2 281 27.8
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 2.1e-12 77.4 307 26.1
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 3.6e-12 76.6 307 26.1
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 6.2e-12 75.9 307 25.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 6.2e-12 75.9 307 25.7
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 6.2e-12 75.9 303 26.7
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 8.1e-12 75.5 307 25.7
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 8.1e-12 75.5 327 26.0
TPR.G22299 Trifolium pratense HOM05D002440 ORTHO05D002576 1.1e-11 75.1 310 24.8
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 1.4e-11 74.7 311 28.0
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 4.0e-11 73.2 307 25.4
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 5.2e-11 72.8 311 27.3
Peaxi162Scf00585g00110 Petunia axillaris HOM05D002440 ORTHO05D002576 6.8e-11 72.4 306 26.8
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 8.9e-11 72.0 305 25.6
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 1.2e-10 71.6 302 24.5
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 1.2e-10 71.6 306 24.5
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.5e-10 71.2 307 25.4
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.5e-10 71.2 339 23.6
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 1.5e-10 71.2 308 25.6
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 2.0e-10 70.9 311 24.4
Nitab4.5_0000200g0200 Nicotiana tabacum HOM05D002440 ORTHO05D002576 2.6e-10 70.5 315 24.8
Nn6g33296 Nelumbo nucifera HOM05D002440 ORTHO05D002576 7.5e-10 68.9 310 23.9
Nitab4.5_0009853g0010 Nicotiana tabacum HOM05D002440 ORTHO05D002576 7.5e-10 68.9 312 24.7
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 1.3e-09 68.2 312 24.0
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 1.3e-09 68.2 313 25.6
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 2.2e-09 67.4 308 24.7
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 2.9e-09 67.0 314 25.2
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 4.9e-09 66.2 309 24.9
Sed0020411 Sechium edule HOM05D002440 ORTHO05D002576 4.9e-09 66.2 312 26.6
SGA_v2.0_scaffold43G16400 Striga asiatica HOM05D002440 ORTHO05D002576 4.9e-09 66.2 290 24.5
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 6.4e-09 65.9 312 24.4
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 8.3e-09 65.5 109 35.8
ClCG05G001350 Citrullus lanatus HOM05D002440 ORTHO05D002576 1.1e-08 65.1 317 21.8
Sed0022066 Sechium edule HOM05D002440 ORTHO05D002576 1.1e-08 65.1 318 23.0
Actinidia10051 Actinidia chinensis HOM05D002440 ORTHO05D002576 1.4e-08 64.7 316 24.1
Sabra14G0064400 Salix brachista HOM05D002440 ORTHO05D002576 1.4e-08 64.7 327 23.9
MSTRG.17290 Avicennia marina HOM05D002440 ORTHO05D002576 1.9e-08 64.3 322 24.2
Prupe.2G175300 Prunus persica HOM05D002440 ORTHO05D002576 2.4e-08 63.9 308 23.1
MSTRG.20851 Avicennia marina HOM05D002440 ORTHO05D002576 5.4e-08 62.8 310 26.1
Ah.15g095810 Amaranthus hybridus HOM05D002440 ORTHO05D002576 9.2e-08 62.0 311 24.1
Lalb_Chr19g0126441 Lupinus albus HOM05D002440 ORTHO05D002576 9.2e-08 62.0 309 25.2
RcHm_v2.0_Chr4g0446391 Rosa chinensis HOM05D002440 ORTHO05D002576 7.8e-07 58.9 278 25.9
HanXRQChr16g0521821 Helianthus annuus HOM05D002440 ORTHO05D002576 1.3e-06 58.2 311 25.1
Nn1g01638 Nelumbo nucifera HOM05D002440 ORTHO05D002576 1.7e-06 57.8 305 22.6
unitig_26.g9742 Utricularia gibba HOM05D002440 ORTHO05D002576 3.9e-06 56.6 294 23.5
HPP92_015002 Vanilla planifolia HOM05D002440 ORTHO05D002576 3.9e-06 56.6 321 24.0
ECA234G2091 Erigeron canadensis HOM05D002440 ORTHO05D002576 8.6e-06 55.5 315 22.2


User provided reference genes

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