Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.0e-63 246.5 119 100.0
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 7.6e-43 177.2 115 76.5
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.9e-41 172.6 119 71.4
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.9e-41 172.6 119 71.4
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 6.0e-40 167.5 120 69.2
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 7.9e-40 167.2 120 69.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 3.2e-33 145.2 123 59.3
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.8e-31 139.4 122 59.8
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 5.1e-31 137.9 122 55.7
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.1e-30 136.7 117 58.1
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.5e-30 136.3 102 64.7
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 9.6e-30 133.7 120 56.7
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.6e-29 132.9 126 54.0
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 3.7e-29 131.7 123 56.1
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 4.1e-28 128.3 121 54.5
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.6e-27 125.6 125 55.2
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 5.8e-27 124.4 124 51.6
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.3e-26 123.2 124 53.2
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.7e-26 122.9 124 56.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.0e-26 121.3 121 52.1
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 5.0e-26 121.3 124 50.0
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 5.0e-26 121.3 122 50.8
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 6.5e-26 120.9 106 61.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.4e-25 119.8 120 52.5
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 4.2e-25 118.2 123 51.2
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 1.6e-24 116.3 100 59.0
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.6e-24 116.3 90 57.8
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.7e-24 115.5 122 47.5
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 6.1e-24 114.4 119 49.6
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 7.9e-24 114.0 123 48.8
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 7.9e-24 114.0 123 48.8
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.8e-23 112.8 120 49.2
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.3e-23 112.5 120 51.7
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.3e-22 108.2 127 48.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 7.4e-22 107.5 91 59.3
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 7.4e-22 107.5 109 52.3
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.6e-21 106.3 121 47.9
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 2.8e-21 105.5 127 47.2
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 2.8e-21 105.5 124 46.0
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 3.7e-21 105.1 124 45.2
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 6.3e-21 104.4 120 49.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 8.2e-21 104.0 94 54.3
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 2.4e-20 102.4 71 66.2
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.1e-20 102.1 129 45.7
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 1.2e-19 100.1 118 43.2
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 1.5e-19 99.8 70 67.1
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 4.5e-19 98.2 60 76.7
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 7.7e-19 97.4 95 53.7
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 7.7e-19 97.4 134 44.8
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.3e-18 96.7 123 51.2
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 5.0e-18 94.7 97 49.5
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 6.5e-18 94.4 101 50.5
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 5.5e-17 91.3 124 44.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 7.2e-17 90.9 100 49.0
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.4e-15 86.7 60 63.3
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.1e-14 83.6 48 75.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 4.3e-14 81.6 50 72.0
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 9.7e-14 80.5 117 43.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 1.4e-12 76.6 127 38.6
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 4.1e-12 75.1 106 39.6
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 9.1e-12 73.9 106 39.6
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 9.1e-12 73.9 106 39.6
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.2e-11 73.6 125 39.2
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.5e-11 73.2 122 38.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.5e-11 73.2 122 38.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 4.5e-11 71.6 95 42.1
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 7.7e-11 70.9 106 38.7
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-10 70.5 106 38.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.3e-10 70.1 128 39.8
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.3e-10 70.1 106 37.7
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 106 37.7
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 2.2e-10 69.3 86 43.0
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.9e-10 68.9 111 36.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 3.8e-10 68.6 121 38.0
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.8e-10 68.6 43 72.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.8e-10 68.6 43 72.1
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.4e-09 66.6 106 39.6
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 2.1e-08 62.8 53 54.7
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.4e-07 60.1 79 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 8.8e-07 57.4 43 62.8
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 2.6e-06 55.8 71 43.7
Mapoly0032s0107 Marchantia polymorpha HOM05D025110 ORTHO05D009967 5.7e-06 54.7 62 45.2


User provided reference genes

Program Settings