Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 3.3e-217 758.1 375 100.0
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.9e-181 638.6 383 84.1
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 5.1e-178 627.9 382 82.2
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.1e-175 618.2 377 81.2
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.6e-174 615.5 379 79.9
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.3e-173 613.2 379 79.7
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.9e-173 612.1 382 80.6
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 9.4e-172 607.1 375 82.1
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.2e-171 606.7 378 80.2
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.2e-171 606.7 378 80.2
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 1.2e-171 606.7 382 80.1
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 2.7e-171 605.5 380 78.7
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 4.7e-171 604.7 379 80.2
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 6.1e-171 604.4 379 79.4
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 6.7e-170 600.9 378 78.8
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 6.7e-170 600.9 380 79.5
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 2.0e-169 599.4 383 78.9
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 5.7e-169 597.8 387 78.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 4.8e-168 594.7 379 79.2
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.8e-167 592.8 383 79.4
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.8e-167 592.8 383 77.5
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 3.1e-167 592.0 379 78.4
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.1e-167 592.0 379 78.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 7.0e-167 590.9 383 76.0
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 2.6e-166 589.0 388 75.5
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 2.6e-166 589.0 381 78.5
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 5.9e-166 587.8 387 76.5
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 5.9e-166 587.8 379 78.1
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 5.9e-166 587.8 379 78.1
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.2e-165 585.9 379 77.8
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 2.2e-165 585.9 390 76.9
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.8e-165 585.1 386 77.2
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 4.2e-164 581.6 376 75.8
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 5.5e-164 581.3 381 75.3
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 5.2e-162 574.7 383 75.7
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 1.1e-161 573.5 380 74.7
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.5e-161 573.2 389 74.0
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.6e-161 572.4 380 74.7
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 3.3e-161 572.0 389 74.8
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.4e-161 571.6 391 73.4
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 4.4e-161 571.6 390 74.4
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 9.7e-161 570.5 389 74.3
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.3e-160 570.1 398 72.6
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 8.2e-160 567.4 380 75.3
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 2.4e-159 565.8 389 74.6
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 2.4e-159 565.8 394 72.8
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 4.1e-159 565.1 384 74.2
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 1.2e-158 563.5 385 73.8
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.2e-158 563.5 384 74.0
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.2e-158 563.5 458 65.3
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 2.6e-158 562.4 379 73.6
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 3.5e-158 562.0 389 73.5
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.2e-157 559.3 388 72.9
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 5.0e-157 558.1 389 73.3
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 5.0e-157 558.1 389 73.3
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.1e-156 557.0 379 74.1
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 4.2e-156 555.1 379 73.6
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 5.5e-156 554.7 381 74.0
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 7.2e-156 554.3 384 73.4
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 9.4e-156 553.9 390 72.3
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 2.1e-155 552.7 379 73.4
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 2.1e-155 552.7 381 73.2
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 4.7e-155 551.6 375 73.9
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 8.0e-155 550.8 432 68.1
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 6.7e-154 547.7 380 74.2
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 8.8e-154 547.4 393 71.5
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 8.8e-154 547.4 376 72.9
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.2e-153 547.0 380 72.6
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 3.3e-153 545.4 297 87.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 5.7e-153 544.7 376 72.6
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 9.7e-153 543.9 384 70.3
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 1.7e-152 543.1 375 73.6
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 3.7e-152 542.0 365 73.4
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.1e-151 540.4 381 73.8
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 7.0e-151 537.7 391 71.4
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 2.9e-149 532.3 376 69.4
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 2.1e-147 526.2 491 59.3
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 3.0e-146 522.3 378 68.8
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 2.6e-145 519.2 424 65.1
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.3e-144 516.9 283 85.5
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 9.1e-143 510.8 378 69.0
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.0e-142 509.6 382 68.1
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 4.2e-140 501.9 378 67.7
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 7.2e-140 501.1 386 65.8
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.0e-138 497.3 388 66.5
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 3.0e-138 495.7 328 72.0
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 4.0e-138 495.4 386 67.1
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 6.8e-138 494.6 377 67.9
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.5e-137 493.4 385 67.0
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 2.4e-135 486.1 393 65.1
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 3.1e-135 485.7 373 70.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 7.0e-135 484.6 291 80.4
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.0e-133 478.4 388 64.4
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 3.3e-132 475.7 388 63.9
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 4.3e-132 475.3 296 76.4
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 4.7e-131 471.9 306 71.6
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 6.6e-125 451.4 375 64.8
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 3.6e-123 445.7 363 63.6
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 5.1e-109 398.7 228 82.5
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 8.6e-109 397.9 296 63.2
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 9.6e-108 394.4 293 62.8
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.3e-104 384.0 311 57.9
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 3.5e-102 375.9 246 75.6
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 7.8e-102 374.8 213 82.2
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 7.8e-102 374.8 213 82.2
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 7.8e-102 374.8 213 82.2
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 5.6e-100 368.6 293 57.3
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.1e-98 364.4 279 63.1
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.4e-95 354.0 213 79.3
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 5.3e-90 335.5 292 61.0
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 6.2e-83 312.0 290 50.0
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 2.3e-77 293.5 229 65.1
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 4.3e-76 289.3 287 47.0
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 8.2e-75 285.0 304 45.7
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.9e-74 282.0 177 76.3
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.4e-71 274.2 278 48.2
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.6e-67 260.8 157 82.2
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.3e-61 240.4 135 85.2
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 5.7e-44 182.6 165 61.8
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 2.0e-41 174.1 161 51.6
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.3e-40 171.4 108 72.2
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 5.7e-36 156.0 108 69.4
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 4.1e-34 149.8 170 52.9
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.9e-31 141.0 95 67.4
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.3e-27 128.3 87 67.8
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 8.0e-22 109.0 64 76.6
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-17 94.7 48 87.5
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 1.6e-17 94.7 48 87.5
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 9.8e-12 75.5 104 45.2
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 1.3e-08 65.1 41 70.7
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 9.5e-07 58.9 43 62.8


User provided reference genes

Program Settings