Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 0.0e+00 2040.0 1011 100.0
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1384.8 1081 68.0
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1231.1 1074 61.8
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1228.0 1034 63.6
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1211.8 1105 59.9
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1162.1 1024 61.5
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1092.0 1070 56.0
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 9.9e-309 1063.5 1053 55.7
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.7e-305 1052.7 1113 52.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 9.3e-299 1030.4 1069 54.2
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 4.0e-294 1015.0 990 56.7
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 2.2e-292 1009.2 1059 52.9
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 8.4e-292 1007.3 1070 53.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 4.2e-291 1005.0 1066 53.5
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 5.4e-291 1004.6 983 55.2
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.6e-290 1003.0 1070 53.0
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.5e-288 996.5 1081 52.6
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 9.0e-286 987.3 1021 54.4
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 4.9e-284 981.5 1092 50.7
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 9.6e-280 967.2 912 57.6
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.3e-276 956.8 1058 51.6
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 5.5e-275 951.4 1058 51.9
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 7.4e-272 941.0 1050 50.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.1e-270 937.2 979 52.1
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 1.3e-268 930.2 1079 49.4
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 1.7e-268 929.9 982 52.7
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 6.5e-268 927.9 1064 51.0
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.0e-265 920.6 975 51.2
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 3.9e-265 918.7 1019 49.4
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.6e-263 913.3 957 52.0
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 2.4e-262 909.4 979 51.8
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 9.4e-259 897.5 1107 47.7
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.8e-254 883.2 1027 49.5
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 7.2e-251 871.3 807 56.4
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 7.2e-243 844.7 998 48.9
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.1e-242 843.2 991 48.7
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 2.3e-241 839.7 983 49.2
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.0e-241 839.3 998 48.7
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.7e-240 835.1 947 50.1
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 5.7e-240 835.1 818 54.8
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 7.7e-237 824.7 978 48.1
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 3.0e-233 812.8 1021 45.7
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 8.3e-231 804.7 992 47.3
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.4e-230 803.1 992 47.2
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 7.7e-229 798.1 1022 45.5
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.3e-228 797.3 1004 47.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.4e-225 787.3 1057 44.2
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 2.6e-224 783.1 822 52.7
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 9.8e-224 781.2 974 46.2
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.4e-222 777.3 1062 45.0
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 7.0e-222 775.0 1014 43.8
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.6e-221 773.9 1011 44.4
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 2.1e-218 763.5 1064 43.1
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.0e-216 756.9 852 48.7
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.6e-213 747.3 838 48.9
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.3e-212 744.2 1044 44.6
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 6.8e-209 731.9 858 47.4
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 8.9e-209 731.5 1019 43.4
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 2.9e-207 726.5 959 44.6
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 5.6e-203 712.2 931 45.1
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 9.2e-198 694.9 849 47.5
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 5.8e-192 675.6 735 49.4
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.0e-188 664.8 1032 41.1
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 5.6e-187 659.1 865 44.9
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 5.3e-177 625.9 898 42.0
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 4.9e-175 619.4 893 42.3
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 4.2e-174 616.3 960 40.7
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 7.1e-174 615.5 863 41.8
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 4.3e-171 606.3 679 51.1
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.2e-168 598.2 876 42.0
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 2.4e-166 590.5 961 39.8
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 4.2e-166 589.7 963 40.2
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 9.3e-166 588.6 950 39.9
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 1.6e-165 587.8 960 39.9
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 2.7e-165 587.0 961 39.8
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.5e-163 581.3 879 39.9
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.4e-153 548.1 575 51.0
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.1e-145 521.9 1031 36.9
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 5.1e-140 503.1 807 39.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.4e-134 485.0 369 66.7
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 5.7e-131 473.0 641 45.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 5.0e-127 459.9 369 63.4
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 8.0e-125 452.6 371 60.6
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.4e-124 451.8 802 36.8
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.2e-123 448.7 446 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 1.5e-123 448.4 773 36.4
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 4.4e-123 446.8 373 61.7
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.2e-118 430.3 344 61.9
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 7.2e-118 429.5 726 39.9
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 4.0e-116 423.7 883 33.0
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 4.7e-109 400.2 338 62.1
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 4.4e-107 393.7 747 33.1
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 2.2e-106 391.3 360 56.4
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 6.3e-106 389.8 318 60.7
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.0e-88 331.6 646 36.7
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 9.2e-73 279.6 279 52.3
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 3.9e-71 274.2 244 59.8
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.3e-63 249.2 428 36.4
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 8.1e-61 240.0 919 25.2
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.1e-61 240.0 183 64.5
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 3.4e-59 234.6 239 49.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.4e-58 229.9 345 39.4
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.4e-58 229.9 345 39.4
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.8e-44 185.7 283 38.9
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.0e-42 179.9 615 25.2
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.5e-27 129.4 214 38.3
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 7.7e-27 127.1 119 49.6
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 5.0e-26 124.4 182 38.5
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 1.8e-23 115.9 350 28.0
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 5.9e-19 100.9 78 61.5
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.5e-17 95.5 243 33.3
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.6e-16 92.8 121 41.3
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.3e-14 85.1 82 58.5
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.6e-11 75.5 103 42.7
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.9e-11 74.3 82 54.9
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.9e-11 74.3 78 46.2
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.2e-10 72.4 82 53.7
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.2e-09 68.6 82 51.2
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.3e-07 62.4 69 46.4
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.2e-07 61.2 91 44.0
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 3.3e-06 58.5 48 56.2


User provided reference genes

Program Settings