Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 1.3e-105 386.7 245 100.0
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 3.4e-90 335.5 185 87.0
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 1.6e-87 326.6 186 84.9
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.4e-86 323.6 188 81.9
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 3.0e-86 322.4 184 84.8
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 3.9e-86 322.0 184 84.8
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 5.1e-86 321.6 187 83.4
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 5.1e-86 321.6 184 84.2
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 6.7e-86 321.2 176 87.5
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.5e-85 320.1 182 83.0
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.0e-85 319.7 187 82.9
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 2.6e-85 319.3 184 83.2
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 4.4e-85 318.5 187 82.4
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 4.4e-85 318.5 184 84.2
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 5.7e-85 318.2 184 81.5
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 9.7e-85 317.4 186 82.3
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 1.7e-84 316.6 187 81.8
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 3.7e-84 315.5 184 81.5
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 3.7e-84 315.5 183 81.4
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 6.3e-84 314.7 187 81.3
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 8.2e-84 314.3 185 80.5
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 8.2e-84 314.3 185 80.5
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 1.1e-83 313.9 187 79.1
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.8e-83 313.2 182 82.4
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 1.8e-83 313.2 179 84.4
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 2.4e-83 312.8 183 83.1
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 2.4e-83 312.8 182 83.0
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 2.4e-83 312.8 183 81.4
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 2.4e-83 312.8 183 82.0
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.1e-83 312.4 185 83.2
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 3.1e-83 312.4 187 80.7
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 3.1e-83 312.4 187 80.7
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.1e-83 312.4 190 81.6
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 3.1e-83 312.4 187 81.3
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 3.1e-83 312.4 241 75.9
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 5.3e-83 311.6 184 80.4
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 5.3e-83 311.6 182 81.3
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 6.9e-83 311.2 182 81.3
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 5.9e-82 308.1 180 81.7
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 7.7e-82 307.8 244 70.1
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 1.3e-81 307.0 180 82.2
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 1.3e-81 307.0 180 81.1
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 2.2e-81 306.2 241 83.0
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 2.9e-81 305.8 184 78.8
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 3.8e-81 305.4 181 80.1
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 3.8e-81 305.4 184 79.3
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 5.0e-81 305.1 172 83.7
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 8.5e-81 304.3 170 85.3
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 1.9e-80 303.1 185 81.1
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 1.9e-80 303.1 180 80.6
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 5.5e-80 301.6 185 80.0
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 5.5e-80 301.6 184 81.0
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 5.5e-80 301.6 170 82.4
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 9.4e-80 300.8 179 80.4
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 9.4e-80 300.8 173 82.1
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 9.4e-80 300.8 175 83.4
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 2.1e-79 299.7 185 81.1
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.1e-79 299.7 184 79.9
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 2.7e-79 299.3 179 79.9
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.7e-79 299.3 187 77.0
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 6.1e-79 298.1 188 78.7
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.0e-78 297.4 185 79.5
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 1.0e-78 297.4 185 79.5
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.0e-78 297.4 186 76.9
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 2.3e-78 296.2 172 80.8
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 2.3e-78 296.2 172 81.4
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 3.0e-78 295.8 183 79.2
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 3.9e-78 295.4 185 76.8
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 6.7e-78 294.7 172 82.6
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 6.7e-78 294.7 172 82.6
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 6.7e-78 294.7 172 82.6
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 6.7e-78 294.7 172 82.6
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 6.7e-78 294.7 183 75.4
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 8.8e-78 294.3 176 79.5
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 2.0e-77 293.1 169 82.2
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 5.7e-77 291.6 181 79.6
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 5.7e-77 291.6 183 74.9
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 7.4e-77 291.2 184 78.8
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.7e-76 290.0 161 85.1
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 1.7e-76 290.0 161 85.1
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 6.3e-76 288.1 241 63.5
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 3.5e-74 282.3 178 77.0
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 1.3e-73 280.4 161 86.3
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 2.9e-73 279.3 179 74.9
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.2e-72 275.8 175 78.9
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 1.2e-71 273.9 185 71.9
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 8.0e-71 271.2 173 74.6
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 5.2e-70 268.5 173 75.7
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 5.2e-70 268.5 173 75.7
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 5.2e-70 268.5 173 75.7
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 2.0e-69 266.5 151 86.8
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 4.4e-69 265.4 171 73.7
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 5.7e-69 265.0 173 77.5
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 9.7e-69 264.2 180 73.3
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 1.4e-67 260.4 152 80.3
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 2.4e-67 259.6 179 67.6
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 1.2e-66 257.3 183 69.9
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 7.7e-66 254.6 170 72.9
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.8e-65 252.3 183 63.4
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.8e-65 252.3 183 63.4
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 1.8e-62 243.4 169 69.8
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 2.3e-62 243.0 147 82.3
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 4.0e-62 242.3 179 64.2
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 3.4e-61 239.2 182 62.6
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 2.8e-60 236.1 140 77.9
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 3.5e-58 229.2 135 84.4
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 2.3e-54 216.5 132 78.0
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 2.0e-53 213.4 170 58.2
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 1.5e-48 197.2 126 74.6
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 9.8e-45 184.5 120 73.3
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.7e-42 176.4 124 71.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 2.1e-39 166.8 105 80.0
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 2.4e-27 126.7 181 40.9
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 6.6e-25 118.6 71 78.9
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 8.1e-23 111.7 190 32.6
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 6.6e-17 92.0 186 36.0
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 5.1e-09 65.9 55 56.4
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 4.3e-08 62.8 183 30.1
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 2.1e-07 60.5 166 28.9
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 2.8e-07 60.1 152 27.0
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 4.8e-07 59.3 152 27.0
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 6.2e-07 58.9 190 28.4
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 6.2e-07 58.9 147 27.9
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 8.1e-07 58.5 152 26.3
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 8.1e-07 58.5 152 28.3
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 26.3
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 27.6
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 1.4e-06 57.8 147 26.5
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 1.8e-06 57.4 147 27.2
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 1.8e-06 57.4 152 27.6
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 1.8e-06 57.4 151 25.8
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 2.4e-06 57.0 152 26.3
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 3.1e-06 56.6 152 26.3
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 3.1e-06 56.6 152 26.3
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 4.0e-06 56.2 147 26.5
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 4.0e-06 56.2 147 26.5
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 4.0e-06 56.2 149 26.2
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 4.0e-06 56.2 146 28.1
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 5.3e-06 55.8 152 27.6
SGA_v2.0_scaffold19G08634 Striga asiatica HOM05D006773 ORTHO05D008775 5.3e-06 55.8 147 27.2
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 6.9e-06 55.5 147 25.9
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 9.0e-06 55.1 147 27.2
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 9.0e-06 55.1 152 26.3


User provided reference genes

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