Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 0.0e+00 2336.6 1189 100.0
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 0.0e+00 1526.1 1213 68.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 0.0e+00 1503.0 1214 66.5
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 0.0e+00 1500.7 1224 65.8
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 0.0e+00 1496.5 1215 66.2
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.1e-290 1003.8 1228 49.4
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.3e-280 969.5 1229 49.8
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 6.4e-275 951.4 1230 47.7
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.8e-269 933.3 1237 47.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 5.8e-268 928.3 1235 47.4
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.9e-259 899.4 1238 46.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.1e-258 897.5 1240 45.9
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 2.5e-258 896.3 1226 48.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.0e-256 891.0 1245 46.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.1e-253 880.9 1233 47.2
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.2e-252 877.5 1230 46.8
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 7.2e-250 868.2 1239 46.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.6e-249 865.9 1233 44.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.7e-246 855.9 1235 46.2
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 8.2e-246 854.7 1237 44.8
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-242 844.0 1237 44.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 3.2e-242 842.8 1209 46.7
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.4e-242 841.3 1237 44.5
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.0e-239 833.6 1230 44.1
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.8e-237 827.0 1237 44.1
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.5e-236 823.9 1251 43.1
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.5e-235 818.5 1241 44.6
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.4e-234 817.4 1241 44.8
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.1e-229 799.7 1026 48.9
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.3e-229 798.9 1241 44.2
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.7e-225 785.8 1241 44.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.0e-220 770.4 1239 43.3
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.7e-198 697.6 1240 41.5
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.1e-197 694.9 1226 40.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.7e-193 679.5 1283 40.2
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.1e-177 627.5 1166 40.0
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.5e-175 621.3 1251 37.4
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.9e-174 617.1 1261 37.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 8.4e-174 615.5 1162 39.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.0e-172 609.4 1161 39.2
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-167 595.1 1049 40.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.5e-167 594.7 1046 41.3
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.6e-161 573.5 1227 38.5
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.6e-161 573.5 1227 38.5
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 3.6e-161 573.5 1215 37.0
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.8e-161 573.2 1224 37.5
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.8e-160 571.2 1224 37.4
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 5.3e-160 569.7 1228 37.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.5e-159 568.2 1229 36.8
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 7.9e-156 555.8 1291 38.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.3e-154 550.4 994 40.3
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.3e-147 528.5 1203 36.9
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.9e-142 510.8 1217 35.7
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 4.5e-135 486.9 1204 35.6
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.9e-130 471.5 1219 34.5
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 8.5e-126 456.1 1251 34.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 5.5e-125 453.4 1065 36.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 3.6e-124 450.7 1090 35.7
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 4.7e-124 450.3 1243 34.4
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 5.1e-123 446.8 1213 34.4
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.7e-121 440.7 1238 33.8
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 5.3e-120 436.8 1034 36.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.1e-117 429.1 1236 33.9
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.2e-117 427.2 693 42.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.3e-114 417.5 1254 32.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 8.2e-113 412.9 1231 33.1
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.5e-109 401.4 1251 32.4
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 7.2e-109 399.8 1240 32.4
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.0e-107 394.0 1256 32.6
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.8e-104 385.2 857 35.7
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.2e-102 378.3 1250 32.1
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.9e-95 353.6 741 37.9
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 8.6e-94 349.7 1242 30.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 8.9e-91 339.7 1162 31.3
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 5.9e-87 327.0 1127 31.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.8e-87 326.6 1205 31.0
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 5.4e-80 303.9 1056 31.1
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.0e-80 303.5 970 33.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 1.2e-79 302.8 511 43.2
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 2.5e-77 295.0 1273 28.7
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-76 292.4 1009 32.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 5.2e-75 287.3 1148 28.8
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.2e-74 286.2 999 30.3
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 4.1e-64 251.1 592 34.1
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.9e-61 242.3 1001 31.3
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.6e-61 240.7 971 31.4
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 9.5e-61 240.0 238 56.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.8e-58 230.7 975 30.4
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.9e-57 228.4 985 29.7
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 8.7e-54 216.9 963 29.7
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.4e-51 209.5 444 36.3
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 6.9e-51 207.2 978 27.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 2.0e-50 205.7 539 34.5
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 4.2e-48 198.0 969 28.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 6.0e-47 194.1 974 27.5
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 5.1e-46 191.0 996 28.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.3e-45 188.3 1030 26.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 9.6e-45 186.8 998 27.0
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.3e-44 186.4 960 27.5
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-44 185.7 997 26.8
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 4.8e-44 184.5 1006 26.6
Haze_08634 Corylus avellana HOM05D003788 ORTHO05D004633 4.8e-44 184.5 184 56.5
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-43 183.3 1006 26.6
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.2e-42 179.9 970 28.0
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-42 179.9 984 27.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-41 176.4 1241 25.1
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-41 175.6 250 46.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.8e-41 174.9 960 27.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 6.4e-41 174.1 908 28.4
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.4e-40 172.2 1012 27.7
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.4e-40 172.2 198 53.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.8e-38 166.0 219 49.3
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.8e-38 166.0 320 38.8
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.3e-37 161.8 250 43.2
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 2.8e-36 158.7 963 26.0
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 4.8e-36 157.9 305 41.3
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 6.2e-36 157.5 957 26.8
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.8e-35 156.0 324 37.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 6.9e-35 154.1 339 37.2
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 7.6e-34 150.6 343 35.9
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 9.9e-34 150.2 369 35.8
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.3e-33 149.8 270 40.0
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.9e-33 147.9 286 40.6
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 8.4e-33 147.1 990 25.9
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 8.4e-33 147.1 990 25.9
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.5e-31 141.7 201 45.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 3.5e-31 141.7 1032 24.5
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.6e-31 141.4 205 45.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 4.6e-31 141.4 985 25.8
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.0e-30 138.7 355 32.7
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 6.7e-30 137.5 212 42.0
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-29 136.7 331 33.8
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-29 136.3 1003 23.8
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.6e-29 133.7 985 25.2
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.3e-28 133.3 366 34.2
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.3e-28 133.3 994 25.5
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.6e-28 132.9 201 43.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.1e-28 132.5 949 25.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.8e-28 131.3 386 33.4
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 8.2e-28 130.6 229 39.3
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 8.2e-28 130.6 229 39.3
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-27 129.4 194 43.3
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 4.5e-26 124.8 157 49.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-26 124.8 140 54.3
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-25 123.2 219 39.7
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-25 123.2 219 39.7
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-25 123.2 219 39.7
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-25 121.7 962 25.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.5e-25 120.9 992 24.4
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 8.4e-25 120.6 328 33.8
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-24 120.2 168 47.6
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-24 120.2 168 47.6
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.9e-24 119.4 748 24.9
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 3.2e-24 118.6 964 26.0
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.7e-23 115.5 270 34.1
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.5e-23 115.2 170 44.7
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 6.0e-23 114.4 170 44.1
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.9e-23 114.0 363 34.2
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-22 113.2 857 25.7
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 2.2e-20 105.9 985 24.1
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-19 102.1 971 24.6
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.6e-18 99.0 145 39.3
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-18 98.2 1003 23.6
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 7.7e-18 97.4 165 40.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-10 73.6 221 29.9
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 1.1e-08 67.0 375 28.3
unitig_749.g13705 Utricularia gibba HOM05D003788 ORTHO05D004633 1.4e-06 60.1 100 44.0


User provided reference genes

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