Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 9.9e-77 290.0 146 100.0
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 4.5e-61 238.0 145 83.4
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 9.9e-61 236.9 145 82.8
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 2.9e-60 235.3 146 84.2
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.6e-58 229.6 146 83.6
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.5e-56 223.0 146 80.1
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.8e-54 216.1 147 77.6
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 5.3e-54 214.5 146 73.3
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 2.9e-52 208.8 147 73.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 4.9e-52 208.0 151 72.8
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.1e-51 206.8 146 74.0
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 4.2e-51 204.9 145 77.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 9.3e-51 203.8 146 71.9
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 2.7e-50 202.2 148 70.9
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.7e-50 202.2 148 70.9
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 6.0e-50 201.1 136 78.7
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.8e-49 199.5 148 70.3
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 3.0e-49 198.7 148 71.6
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.1e-48 196.8 147 74.1
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.3e-48 195.3 151 71.5
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.1e-47 192.6 152 69.7
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 2.8e-47 192.2 144 74.3
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.7e-47 191.8 131 77.1
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.1e-46 190.3 140 72.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 1.4e-46 189.9 128 75.8
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-46 189.5 145 75.2
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-46 189.5 145 75.2
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.8e-46 189.5 147 70.7
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.1e-46 188.7 142 70.4
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 9.0e-46 187.2 146 72.6
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.2e-45 186.8 142 70.4
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 4.5e-45 184.9 141 69.5
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 7.6e-45 184.1 142 69.7
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 7.6e-45 184.1 128 75.0
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 7.6e-45 184.1 126 77.0
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 1.3e-44 183.3 153 71.2
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.3e-44 183.3 145 68.3
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.2e-44 182.6 129 75.2
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.8e-44 181.8 141 72.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.8e-44 181.8 140 72.1
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.4e-43 179.9 142 70.4
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.4e-43 179.9 142 70.4
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.4e-43 179.9 141 69.5
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.5e-43 179.1 129 73.6
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 2.5e-43 179.1 141 71.6
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 4.2e-43 178.3 143 71.3
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 2.1e-42 176.0 141 69.5
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 3.5e-42 175.3 141 68.1
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 4.6e-42 174.9 141 70.2
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 7.9e-42 174.1 145 64.8
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.3e-41 173.3 123 78.0
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.8e-41 172.9 144 66.7
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 3.0e-41 172.2 141 68.8
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 8.7e-41 170.6 141 68.1
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.1e-40 170.2 135 68.9
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.9e-40 169.5 149 67.8
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 9.7e-40 167.2 135 68.9
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 1.3e-39 166.8 135 65.9
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.3e-39 166.8 143 67.8
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 2.8e-39 165.6 129 69.0
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 3.7e-39 165.2 142 62.0
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 3.7e-39 165.2 175 56.0
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 4.8e-39 164.9 141 66.7
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 4.8e-39 164.9 143 65.7
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 4.8e-39 164.9 146 66.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 6.3e-39 164.5 134 67.9
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 8.2e-39 164.1 145 62.8
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 8.2e-39 164.1 141 66.7
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.4e-38 163.3 144 62.5
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 2.4e-38 162.5 141 64.5
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.1e-38 162.2 147 63.3
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 3.1e-38 162.2 144 65.3
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 4.1e-38 161.8 134 66.4
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 5.3e-38 161.4 146 61.6
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 5.3e-38 161.4 132 66.7
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 9.0e-38 160.6 142 61.3
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 9.0e-38 160.6 129 67.4
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 1.2e-37 160.2 135 64.4
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.5e-37 159.8 147 63.3
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 2.6e-37 159.1 141 62.4
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 4.5e-37 158.3 145 59.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 5.9e-37 157.9 141 58.2
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.0e-36 157.1 143 60.8
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.0e-36 157.1 146 62.3
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.7e-36 156.4 147 62.6
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.7e-36 156.4 143 60.8
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.2e-36 156.0 140 63.6
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 8.5e-36 154.1 123 67.5
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 1.4e-35 153.3 124 66.9
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.9e-35 152.9 148 63.5
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.9e-35 152.9 136 64.7
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 5.5e-35 151.4 142 64.1
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.2e-34 150.2 134 64.2
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.1e-34 149.4 131 61.1
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 6.1e-34 147.9 142 59.2
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.0e-33 147.1 140 57.9
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.0e-33 147.1 126 69.0
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.4e-33 146.7 143 58.0
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.3e-33 146.0 143 59.4
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.3e-33 146.0 129 62.0
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 2.3e-33 146.0 142 58.5
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 1.1e-32 143.7 140 58.6
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 1.1e-32 143.7 140 58.6
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 3.3e-32 142.1 128 62.5
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.3e-32 142.1 143 58.0
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.8e-31 139.0 91 80.2
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 2.8e-31 139.0 142 57.7
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 6.3e-31 137.9 127 59.8
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.1e-30 137.1 126 62.7
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.8e-30 136.3 129 59.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 4.1e-30 135.2 152 55.3
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 6.9e-30 134.4 129 59.7
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 4.5e-29 131.7 126 55.6
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.8e-25 119.8 143 49.7
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.3e-25 119.4 127 52.8
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 5.1e-25 118.2 126 55.6
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 4.4e-24 115.2 123 56.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 4.4e-24 115.2 131 49.6
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 3.1e-22 109.0 89 67.4
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 4.1e-22 108.6 132 48.5
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 9.1e-22 107.5 124 54.0
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 7.7e-21 104.4 130 49.2
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 8.5e-20 100.9 99 63.6
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.4e-17 93.6 152 44.7
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.4e-14 83.6 109 55.0
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 9.1e-14 80.9 109 53.2
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.2e-13 80.5 91 49.5
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 3.6e-10 68.9 82 57.3
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 8.8e-09 64.3 122 36.1
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 1.2e-08 63.9 53 56.6
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 2.2e-07 59.7 41 68.3
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.8e-07 59.3 96 41.7
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 3.1e-06 55.8 105 42.9


User provided reference genes

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