Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-64 248.4 126 100.0
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.1e-42 175.3 126 72.2
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.6e-35 151.8 126 67.5
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 1.2e-33 146.7 126 65.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.5e-28 129.0 127 55.1
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.8e-27 125.6 126 56.3
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.6e-27 125.2 126 60.3
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.1e-26 123.6 127 59.1
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.8e-26 122.9 125 58.4
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.8e-26 122.9 125 58.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.8e-26 122.9 126 56.3
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.9e-26 120.6 126 57.9
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.7e-24 116.3 127 54.3
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.8e-24 115.2 127 54.3
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.1e-23 113.6 136 53.7
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.2e-22 110.2 127 56.7
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.6e-22 108.2 126 56.3
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.6e-22 108.2 126 56.3
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 6.0e-22 107.8 126 50.8
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 2.3e-21 105.9 126 49.2
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 3.0e-21 105.5 126 49.2
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 2.5e-20 102.4 131 48.1
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 2.8e-19 99.0 126 46.8
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 5.3e-18 94.7 133 51.9
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 5.3e-18 94.7 127 48.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 6.9e-18 94.4 136 46.3
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.6e-17 92.4 134 46.3
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.6e-17 92.4 127 46.5
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 4.4e-17 91.7 126 44.4
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 5.8e-17 91.3 126 45.2
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.2e-16 89.4 113 49.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.2e-16 89.4 127 45.7
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.2e-16 89.4 127 45.7
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 3.8e-16 88.6 122 47.5
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 1.4e-15 86.7 121 47.1
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.9e-15 86.3 136 45.6
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 3.2e-15 85.5 128 46.9
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.2e-15 85.5 106 43.4
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.1e-15 84.3 96 52.1
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 9.3e-15 84.0 122 45.9
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.3e-15 84.0 122 45.9
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.3e-15 84.0 122 45.9
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.3e-15 84.0 122 45.9
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.6e-14 83.2 138 42.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.1e-14 82.8 132 43.9
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 2.1e-14 82.8 122 45.1
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.7e-14 82.4 130 43.8
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.7e-14 82.4 139 43.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 3.5e-14 82.0 132 43.9
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 3.5e-14 82.0 137 43.8
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.6e-14 81.6 131 45.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 4.6e-14 81.6 137 44.5
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 6.0e-14 81.3 137 42.3
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.9e-14 80.9 138 42.0
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.3e-13 79.3 142 41.5
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.0e-13 79.0 130 45.4
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.9e-13 78.6 130 43.8
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 5.1e-13 78.2 143 43.4
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 5.1e-13 78.2 132 41.7
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.6e-13 77.8 128 46.1
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 8.7e-13 77.4 140 40.7
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.1e-12 77.0 137 41.6
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.5e-12 76.6 155 43.2
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.5e-12 76.6 141 40.4
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.9e-12 76.3 132 43.2
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 4.3e-12 75.1 132 44.7
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 4.3e-12 75.1 148 41.9
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 5.6e-12 74.7 143 41.3
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.6e-12 74.7 138 39.1
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 9.6e-12 73.9 153 39.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.3e-11 73.6 135 44.4
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.3e-11 73.6 129 43.4
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.6e-11 73.2 144 39.6
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.1e-11 72.8 131 42.0
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 2.1e-11 72.8 148 40.5
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 2.8e-11 72.4 166 37.3
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-11 72.4 129 43.4
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.8e-11 72.4 129 43.4
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 3.6e-11 72.0 135 40.7
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.6e-11 72.0 141 40.4
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 6.2e-11 71.2 155 43.2
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 6.2e-11 71.2 161 42.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 8.1e-11 70.9 143 39.9
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.1e-10 70.5 138 44.9
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.1e-10 70.5 137 40.9
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.1e-10 70.5 136 41.9
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.4e-10 70.1 128 43.0
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.4e-10 70.1 128 43.0
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 1.4e-10 70.1 140 44.3
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 1.8e-10 69.7 133 39.8
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.8e-10 69.7 131 43.5
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 3.1e-10 68.9 126 45.2
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 3.1e-10 68.9 143 41.3
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.1e-10 68.9 151 40.4
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 4.0e-10 68.6 140 44.3
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 4.0e-10 68.6 135 41.5
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.6e-09 65.9 145 38.6
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 3.4e-09 65.5 145 37.9
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 9.9e-09 63.9 141 38.3
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.7e-08 63.2 140 36.4
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.4e-08 60.8 72 54.2
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 8.4e-08 60.8 72 54.2
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.1e-07 60.5 136 35.3
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-07 60.1 129 40.3
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 1.4e-07 60.1 135 37.0
Sc17g0007950 Simmondsia chinensis HOM05D004793 ORTHO05D004423 1.9e-07 59.7 136 38.2
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.2e-07 58.9 132 43.2
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 4.2e-07 58.5 135 37.8
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 7.1e-07 57.8 136 39.0
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 7.1e-07 57.8 136 39.7
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 9.3e-07 57.4 132 36.4
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 9.3e-07 57.4 153 34.6
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-06 57.0 72 51.4
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 1.2e-06 57.0 128 38.3
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 1.2e-06 57.0 130 38.5
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.2e-06 57.0 150 37.3
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.6e-06 56.6 157 36.3
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 1.6e-06 56.6 134 38.8
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 1.6e-06 56.6 147 37.4
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.6e-06 56.6 156 37.8
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.6e-06 56.6 139 35.3
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 2.7e-06 55.8 126 37.3
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 2.7e-06 55.8 128 38.3
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 3.5e-06 55.5 133 37.6
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.6e-06 55.1 127 37.0
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 4.6e-06 55.1 130 37.7
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 6.0e-06 54.7 77 44.2
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.0e-06 54.7 135 38.5
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 6.0e-06 54.7 141 36.2
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 7.9e-06 54.3 96 42.7
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 7.9e-06 54.3 128 35.9
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.9e-06 54.3 132 35.6


User provided reference genes

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