Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.3e-237 824.7 432 100.0
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 6.7e-206 720.7 432 86.8
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.0e-205 719.2 423 86.8
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.2e-194 683.3 438 80.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.3e-193 679.9 435 81.8
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.7e-193 679.5 425 81.6
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 9.4e-192 673.7 429 80.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 5.2e-190 667.9 435 79.1
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-189 665.6 425 81.4
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.7e-189 664.5 439 80.6
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.3e-188 663.3 432 80.3
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 6.3e-188 661.0 435 80.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.4e-187 659.8 432 81.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.4e-187 659.8 435 82.3
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.4e-187 659.1 428 79.2
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.4e-187 659.1 429 80.7
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.5e-186 655.2 439 78.4
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.1e-184 650.2 436 78.7
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.5e-184 649.8 436 78.0
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.5e-184 649.0 433 78.3
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 5.5e-184 647.9 435 78.9
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.2e-184 647.5 425 79.3
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 9.4e-184 647.1 435 78.2
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-183 646.0 432 78.5
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.4e-182 643.3 431 78.7
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.2e-182 641.3 431 77.0
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 6.7e-182 641.0 426 80.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.3e-181 638.6 433 78.5
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 7.5e-181 637.5 432 77.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 7.5e-181 637.5 439 75.9
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.3e-180 636.7 469 74.0
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.7e-180 636.3 456 75.0
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 6.3e-180 634.4 432 77.5
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 6.3e-180 634.4 427 80.6
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.4e-179 633.3 425 79.3
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.8e-179 632.9 430 79.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.3e-179 631.3 433 78.1
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.2e-178 630.2 441 76.6
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.7e-178 629.0 436 75.5
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.7e-178 629.0 445 74.8
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 7.7e-178 627.5 436 75.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 2.9e-177 625.5 436 75.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.9e-176 622.9 435 77.0
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 4.2e-176 621.7 431 75.2
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 9.4e-176 620.5 430 76.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.6e-175 618.6 429 74.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.4e-174 616.7 481 71.1
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.8e-174 616.3 424 75.0
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 5.2e-174 614.8 420 77.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 5.2e-174 614.8 420 77.6
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 5.2e-174 614.8 438 77.2
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 8.8e-174 614.0 420 77.4
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 8.8e-174 614.0 420 77.4
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 8.8e-174 614.0 420 77.4
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 5.7e-173 611.3 418 75.8
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 7.5e-173 610.9 420 77.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.2e-172 609.4 416 77.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 8.3e-172 607.4 420 77.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.4e-171 606.7 428 75.9
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.4e-171 606.7 420 74.5
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 1.4e-171 606.7 429 73.2
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 3.1e-171 605.5 443 73.8
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 5.4e-171 604.7 418 74.2
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 7.0e-171 604.4 420 74.5
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.0e-170 602.8 424 76.9
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.0e-170 602.8 435 75.9
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 4.5e-170 601.7 422 76.1
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.5e-170 601.7 426 73.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 5.9e-170 601.3 432 71.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.0e-169 600.5 422 75.6
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 6.6e-169 597.8 426 72.5
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 8.6e-169 597.4 422 75.4
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 1.5e-168 596.7 422 75.4
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.9e-168 596.3 435 74.3
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.9e-168 596.3 433 73.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.2e-168 595.1 422 76.1
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 5.5e-168 594.7 382 83.8
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 9.5e-168 594.0 418 74.6
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 1.2e-167 593.6 453 70.4
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.8e-167 592.4 444 69.8
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.8e-166 589.7 491 70.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.8e-166 587.8 467 69.4
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.5e-165 586.6 420 76.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.3e-164 583.6 418 72.7
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.3e-164 583.6 435 70.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.8e-164 582.4 422 74.6
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.8e-164 582.4 422 71.8
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 4.9e-164 581.6 421 71.7
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.1e-163 580.5 431 70.8
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.8e-163 579.7 435 69.7
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 4.1e-163 578.6 428 70.3
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 4.1e-163 578.6 380 77.9
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 7.0e-163 577.8 450 70.2
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.7e-162 575.9 433 69.5
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.7e-162 575.9 517 62.3
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.5e-162 575.1 422 74.6
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 7.8e-162 574.3 433 73.2
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 1.5e-160 570.1 400 74.5
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 4.4e-157 558.5 443 72.0
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.3e-156 557.0 429 68.5
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 6.4e-156 554.7 434 71.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.4e-155 552.7 426 69.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 7.0e-155 551.2 417 69.1
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 9.5e-152 540.8 483 62.3
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 6.8e-150 534.6 430 66.0
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.8e-149 531.6 437 67.7
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 9.8e-149 530.8 519 61.1
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.4e-147 526.9 393 71.8
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.2e-146 523.9 385 77.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.2e-141 507.3 424 65.6
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.4e-141 505.8 423 66.0
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 2.9e-140 502.7 414 64.7
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.9e-140 501.9 426 65.7
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.4e-139 500.4 377 72.4
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.9e-136 490.0 362 70.4
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 4.0e-134 482.3 320 80.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.7e-130 469.5 416 62.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 4.3e-128 462.2 396 66.7
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.6e-128 461.1 394 62.9
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.1e-126 457.6 344 69.8
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 2.0e-125 453.4 418 58.6
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 7.1e-123 444.9 429 56.9
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 3.5e-122 442.6 449 53.2
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 3.3e-120 436.0 434 55.5
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.0e-114 415.2 435 57.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.7e-113 411.4 437 54.2
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-109 401.0 350 62.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 4.7e-74 282.7 230 65.7
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 4.0e-65 253.1 381 39.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.9e-59 234.2 424 36.6
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 8.0e-42 175.6 204 53.4
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 9.2e-30 135.6 84 81.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.6e-18 97.1 46 97.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.6e-18 97.1 46 97.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.4e-17 95.1 55 81.8
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 2.1e-10 71.2 123 42.3
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.7e-07 61.6 50 64.0


User provided reference genes

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