Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 9.8e-172 606.7 301 100.0
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 5.6e-151 537.7 300 86.7
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 6.9e-149 530.8 297 86.5
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.8e-136 489.6 298 77.5
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.9e-136 488.4 299 77.9
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 6.7e-136 487.6 298 77.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 9.6e-135 483.8 297 78.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.8e-134 482.3 299 75.9
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 2.4e-133 479.2 298 75.2
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 5.3e-133 478.0 298 75.8
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.4e-132 475.3 298 73.5
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 4.5e-132 474.9 298 77.5
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 5.8e-132 474.6 298 74.8
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.2e-131 472.6 300 74.3
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 4.9e-131 471.5 297 75.1
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 6.4e-131 471.1 297 75.1
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 1.1e-130 470.3 301 77.4
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.1e-130 470.3 317 70.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 4.2e-130 468.4 299 75.3
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.7e-128 460.7 298 72.5
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 8.7e-128 460.7 300 72.0
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.8e-126 455.7 300 72.3
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.4e-125 453.4 300 74.3
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.3e-123 446.8 343 64.4
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.9e-123 445.7 299 71.2
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.0e-121 438.0 249 80.7
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.5e-119 433.3 306 69.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 8.2e-118 427.6 267 75.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.0e-115 420.6 300 67.0
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.3e-115 420.2 239 81.6
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.9e-115 419.1 348 61.5
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 4.6e-113 411.8 303 67.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 3.0e-112 409.1 302 66.9
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.3e-111 405.2 298 68.8
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.1e-109 400.6 296 65.5
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.0e-107 394.0 288 63.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.3e-107 393.7 260 70.8
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 2.7e-105 386.0 300 63.0
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.3e-104 382.9 249 75.5
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 1.1e-101 374.0 301 62.5
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.4e-100 369.0 277 62.8
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 6.1e-97 358.2 215 75.8
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.3e-96 356.3 228 74.6
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 9.7e-95 350.9 190 84.7
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.1e-93 345.5 191 83.2
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 5.3e-93 345.1 226 74.3
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 4.1e-77 292.4 192 71.4
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 5.0e-75 285.4 298 54.0
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 6.6e-75 285.0 190 73.2
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 3.6e-73 279.3 286 52.4
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 4.7e-73 278.9 246 58.1
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 9.8e-63 244.6 148 75.0
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.4e-55 219.2 137 74.5
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 1.3e-54 217.6 298 43.3
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 2.3e-48 196.8 116 78.4
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 6.8e-48 195.3 114 78.9
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 1.2e-28 131.3 65 89.2
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 1.8e-24 117.5 114 54.4
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 2.8e-17 93.6 58 72.4
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 1.1e-16 91.7 109 46.8
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.4e-16 90.5 185 33.5
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.0e-16 89.7 195 33.8
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 5.3e-16 89.4 226 30.5
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 6.9e-16 89.0 185 34.1
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.0e-15 87.4 201 32.3
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.0e-15 87.4 158 36.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.4e-15 86.7 185 31.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 4.5e-15 86.3 147 32.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 4.5e-15 86.3 160 32.5
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 5.8e-15 85.9 155 33.5
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 5.8e-15 85.9 223 28.7
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 7.6e-15 85.5 196 32.1
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 7.6e-15 85.5 156 33.3
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 7.6e-15 85.5 131 36.6
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 9.9e-15 85.1 187 32.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.3e-14 84.7 237 27.4
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.2e-14 84.0 136 36.0
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.9e-14 83.6 180 31.7
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.9e-14 83.6 187 32.1
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.9e-14 83.6 184 32.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.8e-14 83.2 165 34.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 3.8e-14 83.2 150 30.7
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 3.8e-14 83.2 165 34.5
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 3.8e-14 83.2 218 29.8
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.9e-14 82.8 131 35.1
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 4.9e-14 82.8 116 36.2
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 4.9e-14 82.8 147 33.3
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.9e-14 82.8 162 32.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 6.4e-14 82.4 119 37.0
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 6.4e-14 82.4 191 30.9
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 8.4e-14 82.0 184 31.5
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 8.4e-14 82.0 186 31.2
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.1e-13 81.6 186 33.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.1e-13 81.6 183 32.2
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.4e-13 81.3 182 32.4
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.4e-13 81.3 128 34.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.4e-13 81.3 191 30.4
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.9e-13 80.9 185 31.9
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.9e-13 80.9 185 31.9
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.9e-13 80.9 126 34.9
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.9e-13 80.9 214 29.0
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.9e-13 80.9 165 33.9
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.9e-13 80.9 142 32.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.5e-13 80.5 131 33.6
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.5e-13 80.5 136 36.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 3.2e-13 80.1 184 31.5
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 3.2e-13 80.1 220 27.7
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 3.2e-13 80.1 191 28.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.2e-13 80.1 191 28.8
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 3.2e-13 80.1 165 33.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.2e-13 80.1 142 33.1
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.2e-13 80.1 163 28.8
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 3.2e-13 80.1 187 31.6
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.2e-13 80.1 131 35.9
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.2e-13 80.1 189 31.2
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 4.2e-13 79.7 184 31.5
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 4.2e-13 79.7 134 34.3
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 4.2e-13 79.7 134 34.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.2e-13 79.7 191 30.9
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 139 36.0
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 142 32.4
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 196 30.1
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 196 30.6
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 4.2e-13 79.7 131 32.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 5.5e-13 79.3 134 34.3
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.5e-13 79.3 192 30.7
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 5.5e-13 79.3 134 34.3
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 5.5e-13 79.3 134 34.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 5.5e-13 79.3 213 28.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 5.5e-13 79.3 191 28.8
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.5e-13 79.3 116 37.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 5.5e-13 79.3 192 29.7
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 7.1e-13 79.0 131 34.4
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 7.1e-13 79.0 131 34.4
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 7.1e-13 79.0 191 30.4
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.1e-13 79.0 116 37.1
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 9.3e-13 78.6 185 30.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.3e-13 78.6 116 36.2
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 9.3e-13 78.6 116 36.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.2e-12 78.2 197 32.0
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.2e-12 78.2 116 36.2
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.6e-12 77.8 195 31.3
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.6e-12 77.8 191 29.3
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.6e-12 77.8 189 31.2
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.6e-12 77.8 116 35.3
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.1e-12 77.4 195 30.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 2.1e-12 77.4 191 30.4
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.7e-12 77.0 121 36.4
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.7e-12 77.0 185 31.9
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.7e-12 77.0 145 33.1
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.7e-12 77.0 190 27.9
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.5e-12 76.6 184 31.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 3.5e-12 76.6 116 35.3
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 4.6e-12 76.3 116 36.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 4.6e-12 76.3 184 29.3
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 4.6e-12 76.3 273 28.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 4.6e-12 76.3 260 26.5
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 7.9e-12 75.5 187 29.4
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 7.9e-12 75.5 131 32.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 7.9e-12 75.5 145 32.4
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.0e-11 75.1 189 29.1
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.3e-11 74.7 197 31.5
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.3e-11 74.7 185 29.7
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.3e-11 74.7 191 29.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.3e-11 74.7 191 29.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.8e-11 74.3 183 29.5
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.8e-11 74.3 184 29.9
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.3e-11 73.9 128 32.0
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 2.3e-11 73.9 126 32.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 3.0e-11 73.6 191 28.3
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 3.0e-11 73.6 184 28.8
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 8.7e-11 72.0 116 34.5
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.6e-10 69.3 229 25.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 9.6e-10 68.6 131 33.6
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 4.8e-09 66.2 240 25.8
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 8.2e-09 65.5 199 28.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.0e-06 58.5 67 41.8
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.9e-06 57.0 94 34.0


User provided reference genes

Program Settings