Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.7e-141 504.2 250 100.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.4e-131 472.2 246 93.1
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.4e-131 472.2 246 93.1
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.2e-130 469.9 246 92.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.0e-129 466.8 246 91.5
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.0e-129 466.8 246 92.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.0e-129 466.8 247 92.3
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.3e-129 466.5 244 93.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 2.9e-129 465.3 246 91.5
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 3.8e-129 464.9 247 91.9
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 6.5e-129 464.2 246 92.3
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 6.5e-129 464.2 251 90.0
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 8.5e-129 463.8 246 91.1
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.1e-128 463.4 248 91.9
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.1e-128 463.4 246 90.7
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.5e-128 463.0 246 91.1
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.5e-128 462.2 244 92.2
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 2.5e-128 462.2 248 92.3
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 7.2e-128 460.7 249 90.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 7.2e-128 460.7 244 91.8
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 7.2e-128 460.7 248 91.9
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 9.4e-128 460.3 245 90.6
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.2e-127 459.9 246 90.2
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.7e-127 458.0 254 88.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 4.7e-127 458.0 246 90.7
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 4.7e-127 458.0 244 91.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 6.1e-127 457.6 246 90.2
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.4e-126 456.4 245 89.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.8e-126 456.1 246 89.8
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 4.0e-126 454.9 246 89.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 8.8e-126 453.8 246 89.4
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 8.8e-126 453.8 248 89.5
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 8.8e-126 453.8 248 89.5
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.2e-125 453.4 246 89.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.5e-125 453.0 249 89.2
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.0e-125 452.6 246 89.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.6e-125 452.2 248 89.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 4.4e-125 451.4 246 88.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 5.7e-125 451.1 244 90.2
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 7.5e-125 450.7 247 87.9
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 7.5e-125 450.7 249 87.6
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 9.8e-125 450.3 247 87.4
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.3e-124 449.9 244 89.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.7e-124 449.5 246 89.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.7e-124 449.5 246 87.8
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.2e-124 449.1 232 93.1
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.2e-124 449.1 246 87.0
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 4.9e-124 448.0 244 89.3
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-123 446.8 247 87.4
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 246 86.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 246 86.2
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.4e-123 446.4 244 88.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 86.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.1e-123 445.3 244 87.7
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 3.1e-123 445.3 247 87.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 4.1e-123 444.9 246 85.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.1e-123 444.9 246 89.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.4e-123 444.5 247 87.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 7.0e-123 444.1 246 87.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 7.0e-123 444.1 248 87.5
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.0e-122 442.6 245 86.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.7e-122 442.2 248 88.7
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.5e-122 441.8 245 88.6
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 4.5e-122 441.4 246 84.6
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 7.7e-122 440.7 241 90.0
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.3e-121 439.1 293 77.1
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 5.0e-121 438.0 246 83.7
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 5.0e-121 438.0 246 83.7
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 5.0e-121 438.0 248 87.5
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 5.0e-121 438.0 246 86.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 6.6e-121 437.6 245 87.8
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.5e-120 436.4 268 81.0
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.9e-120 436.0 246 83.7
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.5e-120 435.6 247 85.4
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.6e-119 431.8 246 84.1
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.0e-118 430.3 246 83.3
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.0e-118 430.3 246 83.3
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.4e-118 429.9 242 84.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.8e-118 429.5 246 83.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.8e-118 429.5 246 83.3
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.8e-118 429.5 269 80.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.0e-118 428.7 246 82.9
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 6.8e-118 427.6 246 82.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 6.8e-118 427.6 246 82.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.6e-117 425.6 233 89.3
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.4e-117 424.9 248 81.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.9e-116 421.4 293 71.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 6.4e-116 421.0 246 82.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 5.4e-115 417.9 230 86.1
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 7.8e-114 414.1 240 82.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 8.6e-113 410.6 246 80.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.4e-110 403.3 359 59.9
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.3e-110 402.5 246 79.3
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 4.9e-108 394.8 250 73.6
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 7.0e-107 391.0 252 79.0
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.2e-103 380.2 248 71.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.6e-103 379.8 248 74.2
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.8e-103 379.0 243 76.5
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.8e-102 376.3 244 77.9
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.5e-101 373.2 239 76.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.5e-101 373.2 212 86.8
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.5e-96 355.9 246 72.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 8.1e-95 350.9 233 73.8
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.4e-94 350.1 246 74.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.8e-92 342.0 194 87.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 6.0e-90 334.7 175 90.9
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.0e-89 334.0 193 85.0
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 8.6e-89 330.9 238 66.4
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 4.2e-83 312.0 187 82.4
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.6e-82 308.5 320 54.1
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.9e-74 281.2 151 90.1
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.3e-73 280.4 202 70.3
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.3e-72 275.8 245 53.5
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.8e-71 271.9 180 72.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.9e-68 261.9 211 67.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.0e-65 254.2 254 50.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.7e-65 251.5 151 79.5
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 5.8e-61 238.4 196 62.2
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.5e-59 231.9 248 54.4
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.4e-53 212.6 122 84.4
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.3e-49 199.9 118 81.4
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.0e-49 199.5 99 97.0
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 1.4e-46 190.7 249 45.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.2e-44 183.3 96 89.6
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.6e-42 177.2 96 84.4
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 5.7e-40 168.7 253 35.6
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.3e-39 167.5 158 62.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.5e-37 160.6 111 68.5
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-37 160.6 92 83.7
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.2e-29 134.4 128 58.6
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.1e-18 97.1 65 63.1
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.4e-17 94.4 98 51.0
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.5e-16 90.9 137 45.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 8.3e-15 85.1 55 76.4
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.4e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 2.7e-13 80.1 56 71.4
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 1.2e-08 64.7 55 63.6


User provided reference genes

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