Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.7e-230 802.4 422 100.0
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.2e-111 407.5 437 57.0
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 5.7e-109 398.7 436 58.3
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.1e-99 365.9 409 57.9
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 5.4e-91 339.0 442 53.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.5e-80 304.3 453 47.7
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 1.9e-72 277.3 446 44.2
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 4.3e-72 276.2 455 44.2
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 8.0e-71 271.9 441 46.0
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.5e-69 267.7 441 45.1
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.0e-69 267.3 439 46.0
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 3.4e-69 266.5 435 43.9
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.3e-68 261.9 414 46.4
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.4e-67 261.2 398 46.2
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.2e-66 258.1 447 43.2
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 2.1e-66 257.3 443 43.1
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.7e-66 256.9 438 44.1
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.5e-64 251.1 409 46.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 3.6e-63 246.5 382 47.4
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 4.7e-63 246.1 465 42.8
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.7e-63 246.1 452 40.9
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 6.2e-63 245.7 451 41.5
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 8.1e-63 245.4 455 43.1
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.2e-61 241.5 450 41.6
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.6e-61 240.4 423 41.6
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.8e-61 239.2 404 44.3
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 8.3e-60 235.3 405 43.2
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 5.4e-59 232.6 438 41.1
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 7.1e-59 232.3 409 42.1
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.2e-58 231.5 451 40.4
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 2.1e-58 230.7 440 42.5
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.7e-58 230.3 418 41.9
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 7.8e-58 228.8 422 41.0
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 7.8e-58 228.8 405 44.2
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.0e-57 228.4 460 40.9
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.3e-57 228.0 403 41.4
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 6.6e-57 225.7 442 41.6
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 8.6e-57 225.3 403 41.9
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-56 224.2 424 41.0
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.2e-55 221.5 412 42.0
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 8.1e-55 218.8 401 42.9
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.4e-54 218.0 445 40.7
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 5.2e-54 216.1 457 41.1
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.2e-53 214.9 420 40.2
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 4.4e-53 213.0 296 50.0
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 4.4e-53 213.0 461 40.6
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.3e-52 211.5 442 39.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.9e-52 210.3 399 39.8
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.9e-52 209.5 458 38.2
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 6.4e-52 209.1 445 40.9
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 5.4e-51 206.1 417 38.6
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.2e-50 204.9 440 40.2
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.6e-50 203.0 412 42.2
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.7e-49 201.1 416 39.4
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 5.1e-49 199.5 415 40.2
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 5.6e-48 196.1 445 38.2
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 6.2e-47 192.6 444 35.8
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.4e-46 191.4 404 39.4
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.1e-46 190.3 427 38.6
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.6e-45 187.2 402 37.6
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 3.4e-45 186.8 372 40.6
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.9e-44 183.7 459 36.4
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 4.9e-44 183.0 383 39.4
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 4.2e-43 179.9 412 35.7
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.6e-42 177.9 430 37.4
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.7e-42 177.2 421 36.3
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.6e-42 176.4 427 36.3
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.0e-41 175.3 433 36.0
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.0e-41 173.7 354 40.7
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 8.7e-41 172.2 398 36.2
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.5e-40 170.6 434 36.9
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 4.3e-40 169.9 428 36.2
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 9.6e-40 168.7 414 36.2
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 2.1e-39 167.5 452 34.7
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 3.6e-39 166.8 386 38.9
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.4e-38 164.9 405 38.3
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.8e-38 164.5 415 36.1
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.5e-37 161.4 415 38.1
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 5.8e-37 159.5 428 33.2
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 1.3e-36 158.3 425 35.3
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 8.4e-36 155.6 421 35.2
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.4e-35 154.8 440 34.3
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 3.2e-35 153.7 451 33.0
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 4.2e-35 153.3 306 40.8
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-34 151.8 412 35.9
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.7e-34 150.6 418 34.9
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.6e-34 149.8 437 33.4
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-31 141.7 226 43.8
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.6e-31 141.4 463 31.5
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.6e-31 141.4 285 39.6
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.0e-30 136.7 241 45.6
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 4.0e-30 136.7 464 31.5
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 5.3e-30 136.3 411 36.0
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 5.3e-30 136.3 428 34.3
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 6.9e-30 136.0 235 41.3
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-29 135.2 426 31.5
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 3.4e-29 133.7 422 31.8
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 5.8e-29 132.9 394 33.8
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.6e-29 132.5 405 33.6
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.1e-27 128.6 244 36.9
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.1e-27 128.6 400 33.2
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.1e-27 128.6 241 44.0
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 4.2e-27 126.7 398 33.9
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 7.9e-26 122.5 290 36.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 3.1e-22 110.5 400 33.0
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 4.0e-22 110.2 430 32.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.5e-21 108.2 406 31.5
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 2.0e-21 107.8 406 31.5
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 4.5e-21 106.7 388 28.6
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 8.4e-20 102.4 226 37.2
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.1e-19 102.1 400 29.8
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 2.5e-19 100.9 328 31.4
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 3.2e-19 100.5 258 35.7
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 9.3e-19 99.0 438 28.3
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.6e-18 98.2 224 37.5
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 2.1e-18 97.8 404 30.4
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 6.0e-18 96.3 257 37.7
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.8e-17 94.7 257 37.4
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 2.8e-15 87.4 419 28.9
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 6.3e-15 86.3 403 29.8
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 2.4e-14 84.3 460 27.8
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 5.3e-14 83.2 213 33.8
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-13 82.0 243 33.7
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 2.6e-13 80.9 400 28.5
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.3e-12 78.6 239 31.4
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 1.3e-12 78.6 437 27.9
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.3e-12 78.6 423 28.8
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.4e-11 75.1 310 29.7
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.6e-10 71.6 415 27.0
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.8e-09 68.2 438 28.5
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 3.0e-09 67.4 289 31.1
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 5.7e-08 63.2 210 31.9
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 3.7e-07 60.5 407 27.3
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 4.8e-07 60.1 81 53.1
MBI06_g40465_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 8.2e-07 59.3 89 50.6
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 1.8e-06 58.2 450 27.8
Os01g0212500 Oryza sativa ssp. japonica HOM05D041388 ORTHO05D037239 9.1e-06 55.8 41 68.3


User provided reference genes

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