Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.2e-150 535.8 305 100.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.1e-133 480.3 303 88.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.5e-127 459.9 305 83.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.3e-126 456.8 305 85.6
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 6.3e-126 454.5 306 81.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.1e-125 452.2 306 85.9
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 9.1e-125 450.7 306 85.6
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.0e-124 449.5 303 83.2
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.7e-123 446.4 306 78.4
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 8.5e-123 444.1 306 79.4
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.5e-122 442.6 306 72.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 3.2e-122 442.2 306 84.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.5e-122 441.4 303 84.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.7e-121 438.3 308 82.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 4.7e-121 438.3 307 82.4
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 3.0e-120 435.6 306 70.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.2e-119 433.7 310 82.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.2e-119 433.7 305 84.3
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.4e-119 431.8 306 79.1
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.7e-118 428.7 312 69.9
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 4.9e-118 428.3 305 79.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.1e-117 427.2 303 79.9
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.8e-117 426.4 299 70.6
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.4e-117 426.0 306 77.1
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 5.4e-117 424.9 304 76.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.6e-116 423.3 319 74.6
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 7.7e-116 421.0 304 81.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 7.7e-116 421.0 304 80.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.0e-115 420.6 306 79.4
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.3e-115 420.2 306 78.8
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 3.8e-115 418.7 309 79.6
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.9e-114 416.4 308 79.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.9e-114 416.4 308 68.2
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 3.3e-114 415.6 304 82.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 9.5e-114 414.1 308 76.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.2e-113 413.7 304 71.4
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.2e-113 413.7 306 80.1
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 6.1e-113 411.4 312 78.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.8e-112 409.8 316 77.8
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.0e-112 408.7 304 75.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 8.9e-112 407.5 309 68.6
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.2e-111 407.1 309 68.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.4e-111 405.6 310 69.4
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.4e-111 405.6 307 74.6
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 7.5e-111 404.4 306 74.8
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.3e-110 403.7 309 68.0
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.3e-110 403.7 306 78.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.7e-110 403.3 306 75.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.2e-110 402.9 309 81.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.9e-110 402.5 308 78.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 4.9e-110 401.7 309 68.3
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.1e-109 400.6 306 72.2
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.1e-109 400.6 312 76.6
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.4e-109 400.2 309 67.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.8e-109 399.8 304 68.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.2e-109 399.1 306 78.4
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.6e-108 396.7 307 70.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 7.8e-108 394.4 308 76.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.3e-107 392.9 315 64.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.3e-107 392.9 319 74.6
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 6.6e-107 391.3 284 78.5
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 8.6e-107 391.0 308 64.6
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-106 390.6 310 64.5
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-106 390.6 308 64.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-106 390.2 308 71.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.3e-106 387.9 308 63.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.1e-105 386.3 306 72.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 6.2e-105 384.8 337 71.8
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.8e-104 383.3 306 78.1
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.0e-104 382.1 311 65.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-104 381.3 318 68.9
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 8.9e-104 380.9 308 63.3
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.5e-103 380.2 341 60.1
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.0e-103 379.8 304 64.1
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.8e-103 378.3 319 71.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.8e-103 377.5 308 62.7
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 6.4e-102 374.8 287 78.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.1e-101 374.0 318 69.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.2e-101 372.5 287 78.4
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.4e-101 371.7 317 71.0
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.0e-100 369.8 306 65.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 3.5e-100 369.0 296 75.7
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 4.6e-100 368.6 307 61.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.3e-99 366.3 308 60.1
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.9e-99 365.5 306 74.2
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-98 363.6 310 68.7
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 4.3e-98 362.1 355 60.0
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 4.3e-98 362.1 355 60.0
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 7.3e-98 361.3 306 74.5
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 9.5e-98 360.9 279 78.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.2e-97 360.5 305 63.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.8e-96 354.8 281 77.2
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 7.5e-95 351.3 240 87.5
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.9e-94 349.4 255 85.1
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.1e-93 347.4 255 84.7
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.1e-93 347.4 284 76.4
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.3e-91 340.5 323 63.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.3e-91 340.5 307 57.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 3.9e-91 339.0 349 60.2
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 3.9e-91 339.0 349 60.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.1e-91 338.6 310 67.7
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 6.6e-91 338.2 270 65.9
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-90 337.0 261 77.8
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.2e-89 334.0 337 54.0
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-88 330.5 305 56.4
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-86 323.2 308 56.2
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.0e-83 314.3 262 62.2
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 9.6e-82 307.8 270 59.3
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.8e-81 306.2 214 82.2
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.2e-79 300.8 216 81.0
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.4e-79 299.3 231 66.2
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.2e-77 292.7 232 79.3
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 3.5e-76 289.3 234 79.9
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.0e-75 287.7 232 78.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 3.9e-75 285.8 296 52.7
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.9e-74 283.5 231 64.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 9.0e-72 274.6 239 78.2
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 5.8e-71 271.9 189 92.6
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-70 270.4 249 58.6
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 2.3e-67 260.0 236 58.1
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.9e-67 259.2 230 73.5
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.1e-66 257.7 232 75.4
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.5e-66 257.3 297 52.2
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.6e-66 254.6 243 67.9
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 4.8e-65 252.3 232 75.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-64 250.4 214 76.2
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 6.7e-59 231.9 245 68.6
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.9e-58 230.3 127 84.3
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.8e-54 216.1 241 52.3
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 7.1e-53 211.8 294 43.2
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-51 208.0 233 51.9
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.0e-51 208.0 233 51.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.1e-48 196.4 324 48.1
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.5e-46 188.3 288 41.7
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.7e-44 183.3 243 56.8
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.8e-43 180.6 266 53.0
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.9e-40 168.7 146 75.3
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-39 167.5 149 79.9
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 8.5e-38 161.8 172 52.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.2e-37 159.5 161 56.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 6.1e-36 155.6 318 32.7
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.8e-35 151.8 74 89.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.7e-33 147.5 245 40.8
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.7e-30 137.5 73 78.1
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-29 134.8 155 69.0
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 7.2e-29 132.1 73 80.8
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-28 131.3 118 57.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.6e-26 123.6 89 67.4
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.6e-23 113.6 59 79.7
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.6e-18 97.1 50 78.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 7.5e-18 95.5 126 34.9
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 7.0e-16 89.0 136 40.4
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.5e-15 86.3 83 59.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.7e-14 84.3 94 50.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-13 81.6 100 48.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-10 71.2 46 73.9
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.4e-10 70.1 46 71.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 6.3e-09 65.9 100 40.0


User provided reference genes

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