Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 0.0e+00 1151.3 586 100.0
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 2.5e-211 739.2 605 66.4
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 4.7e-194 681.8 590 63.7
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 2.4e-150 536.6 598 51.8
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 4.2e-142 509.2 609 49.8
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 1.6e-141 507.3 602 49.7
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 9.0e-137 491.5 601 49.1
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 4.9e-135 485.7 601 48.3
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 1.9e-134 483.8 589 50.1
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 5.1e-132 475.7 591 48.7
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 6.7e-132 475.3 604 49.2
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 7.4e-131 471.9 568 50.2
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 3.4e-128 463.0 583 49.1
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 5.8e-128 462.2 590 46.6
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 3.8e-127 459.5 606 46.7
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 8.4e-127 458.4 586 49.3
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 8.4e-127 458.4 573 48.9
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 1.1e-126 458.0 588 48.5
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 1.8e-124 450.7 599 47.4
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 1.8e-124 450.7 591 45.2
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 2.3e-124 450.3 590 45.4
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 6.7e-124 448.7 470 54.7
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 4.8e-122 442.6 591 44.8
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 1.0e-119 434.9 517 49.7
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 1.7e-119 434.1 583 47.0
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 2.5e-118 430.3 507 50.9
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 3.5e-117 426.4 595 44.0
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 3.0e-116 423.3 593 45.4
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.5e-115 421.0 508 50.2
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.5e-115 421.0 604 45.5
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 2.5e-115 420.2 623 44.5
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 3.3e-115 419.9 504 50.6
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 2.8e-114 416.8 596 43.0
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 2.8e-114 416.8 530 45.3
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 8.2e-114 415.2 596 42.6
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 2.4e-113 413.7 577 45.9
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 1.2e-112 411.4 574 44.9
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.2e-112 411.4 532 48.5
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 2.0e-112 410.6 560 47.1
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 3.4e-112 409.8 495 49.1
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 5.9e-112 409.1 532 48.5
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 5.9e-112 409.1 495 49.1
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 5.9e-112 409.1 524 44.7
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 7.6e-112 408.7 491 49.5
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 5.0e-111 406.0 606 44.4
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.4e-110 404.4 687 41.0
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 1.1e-107 394.8 590 42.5
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.9e-107 394.0 532 47.0
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 1.9e-107 394.0 531 43.3
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 7.4e-107 392.1 590 41.9
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 5.3e-105 386.0 595 43.7
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 2.0e-104 384.0 574 40.4
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 2.9e-103 380.2 445 51.2
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 3.2e-102 376.7 602 43.2
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 7.2e-102 375.6 603 41.5
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 4.7e-101 372.9 604 42.5
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 1.8e-100 370.9 504 45.2
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 1.5e-99 367.9 542 43.0
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 1.1e-97 361.7 615 39.0
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 1.8e-97 360.9 583 43.6
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 4.5e-96 356.3 604 41.6
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 5.5e-94 349.4 588 41.7
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 1.2e-93 348.2 595 41.3
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 1.6e-93 347.8 591 41.5
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 1.8e-92 344.4 548 40.1
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 6.7e-92 342.4 610 38.4
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 2.6e-91 340.5 507 43.4
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 3.1e-89 333.6 521 38.0
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 9.1e-89 332.0 603 38.6
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.7e-87 327.8 521 38.4
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.6e-85 321.2 660 36.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 4.8e-82 309.7 602 36.4
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 7.7e-80 302.4 367 49.6
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 1.7e-79 301.2 627 35.7
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 6.5e-79 299.3 598 37.8
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.6e-77 294.7 656 34.8
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 3.6e-77 293.5 530 40.9
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 1.8e-76 291.2 610 36.7
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.8e-76 291.2 381 47.2
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 4.0e-76 290.0 359 46.5
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 1.2e-75 288.5 438 41.6
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 5.7e-75 286.2 453 40.4
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 7.5e-75 285.8 411 45.0
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 4.1e-73 280.0 585 36.8
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 4.5e-72 276.6 578 36.2
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 1.3e-71 275.0 571 36.6
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 3.8e-71 273.5 588 36.4
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 6.5e-71 272.7 598 35.6
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 8.6e-71 272.3 592 35.6
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 1.1e-70 271.9 582 36.9
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 2.1e-69 267.7 582 36.6
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 1.0e-68 265.4 569 35.3
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 1.8e-68 264.6 595 33.9
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 1.7e-66 258.1 539 36.2
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 2.8e-66 257.3 598 37.0
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 3.7e-66 256.9 582 34.7
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 3.1e-65 253.8 590 33.7
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 4.1e-65 253.4 573 34.7
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 2.0e-64 251.1 553 36.2
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 3.5e-64 250.4 521 35.9
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 1.7e-63 248.1 643 33.6
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 7.3e-62 242.7 433 37.6
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 4.0e-60 236.9 456 38.2
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 8.9e-60 235.7 570 35.3
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 8.9e-60 235.7 467 38.8
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 1.2e-59 235.3 566 34.8
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 2.0e-59 234.6 457 39.2
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 1.3e-58 231.9 589 34.1
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 8.3e-58 229.2 566 34.5
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 8.9e-52 209.1 154 70.1
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 7.0e-49 199.5 563 33.4
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 7.3e-46 189.5 559 32.6
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 1.7e-31 141.7 413 31.7
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.5e-30 138.7 433 30.3
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 4.3e-30 137.1 299 34.1
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 1.2e-27 129.0 241 36.1
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 2.0e-27 128.3 221 37.6
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 5.4e-25 120.2 255 34.9
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 4.0e-20 104.0 80 68.8
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 2.5e-14 84.7 456 25.0
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 3.8e-10 70.9 114 40.4
SEGI_39127 Sequoiadendron giganteum HOM05D006267 ORTHO05D007490 4.9e-10 70.5 263 24.3
Zm00001eb203960 Zea mays HOM05D006267 ORTHO05D007490 1.2e-08 65.9 220 26.8
HPP92_023938 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.0e-07 62.8 98 39.8
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.0e-07 62.8 184 28.8


User provided reference genes

Program Settings