Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.8e-210 735.7 378 100.0
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 9.0e-98 361.3 377 57.0
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.6e-86 323.9 375 51.2
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 4.6e-86 322.4 398 50.0
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 8.8e-85 318.2 384 49.5
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 4.4e-84 315.8 384 50.3
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 8.2e-83 311.6 383 47.8
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 7.7e-81 305.1 381 47.5
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 7.9e-78 295.0 384 49.0
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 1.8e-77 293.9 390 49.0
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.0e-74 282.0 381 47.0
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.9e-71 273.9 381 45.1
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 3.2e-71 273.1 395 46.8
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.1e-70 270.4 457 39.4
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 6.1e-70 268.9 404 44.6
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 1.8e-69 267.3 382 43.5
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 4.4e-68 262.7 287 51.6
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 7.5e-68 261.9 386 45.1
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 9.7e-68 261.5 386 43.8
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.7e-67 259.6 386 43.5
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.7e-67 259.6 386 43.5
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 4.8e-67 259.2 381 44.9
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.4e-66 257.7 277 49.1
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.1e-66 256.1 386 43.5
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.1e-66 256.1 229 54.6
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 2.7e-65 253.4 381 44.1
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 4.5e-65 252.7 259 51.0
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 2.9e-64 250.0 385 42.3
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 4.2e-63 246.1 384 42.2
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 4.2e-63 246.1 392 44.1
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.6e-62 244.2 384 44.0
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.7e-59 234.2 250 50.4
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.1e-58 231.5 224 53.6
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.0e-58 228.8 267 46.1
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.2e-57 228.0 385 38.7
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 4.5e-57 226.1 228 50.9
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 1.7e-56 224.2 381 41.7
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 6.5e-56 222.2 337 40.9
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.5e-55 221.1 338 40.8
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.8e-54 216.9 281 46.6
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.6e-54 216.5 382 40.1
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 2.3e-53 213.8 387 37.7
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 4.4e-52 209.5 209 52.6
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 7.5e-52 208.8 387 37.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.7e-51 207.6 384 36.5
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 8.3e-51 205.3 377 38.5
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 7.0e-50 202.2 334 39.8
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 3.5e-49 199.9 388 37.6
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 1.0e-48 198.4 261 49.4
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 5.0e-48 196.1 353 36.8
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 8.6e-48 195.3 326 39.9
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.1e-47 194.9 283 42.0
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.1e-47 194.9 231 46.8
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.5e-47 194.5 382 35.6
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 3.3e-47 193.4 307 40.1
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 1.2e-46 191.4 523 31.4
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 2.1e-46 190.7 258 43.4
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 4.7e-46 189.5 207 46.4
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.0e-45 188.3 254 40.9
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 1.4e-45 188.0 345 38.0
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 5.2e-45 186.0 352 38.4
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 3.4e-44 183.3 310 40.3
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 5.7e-44 182.6 401 36.2
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 9.8e-44 181.8 279 40.1
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 8.3e-43 178.7 376 37.0
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 8.3e-43 178.7 335 38.5
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 1.2e-41 174.9 285 41.4
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 4.6e-41 172.9 415 32.8
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 5.9e-41 172.6 366 35.0
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 7.8e-41 172.2 296 40.9
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.7e-40 171.0 409 34.5
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 1.1e-39 168.3 316 38.0
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 3.3e-39 166.8 237 44.7
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 3.3e-39 166.8 237 44.7
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 7.3e-39 165.6 237 44.7
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 7.3e-39 165.6 183 47.0
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 9.5e-39 165.2 288 37.2
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.6e-36 157.1 378 34.1
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.3e-35 154.8 149 52.3
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 4.9e-35 152.9 320 37.8
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 1.4e-34 151.4 320 38.4
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 1.9e-34 151.0 305 38.0
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 2.4e-34 150.6 322 39.1
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 6.0e-33 146.0 156 48.1
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 3.9e-32 143.3 340 35.3
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 3.3e-31 140.2 294 34.7
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.3e-31 140.2 226 43.4
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.4e-28 130.2 214 46.3
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 3.0e-24 117.1 304 32.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 6.8e-21 105.9 223 32.7
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 6.4e-19 99.4 219 30.1
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 7.1e-18 95.9 235 29.4
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 2.7e-17 94.0 279 29.0
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 7.8e-17 92.4 222 29.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.0e-16 92.0 388 28.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.3e-16 91.7 219 32.4
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.0e-16 90.5 252 29.8
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.0e-16 90.5 232 30.6
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 6.6e-16 89.4 296 26.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.7e-16 89.0 219 29.7
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.5e-15 88.2 263 30.4
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.5e-15 88.2 263 30.4
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.5e-15 88.2 263 30.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.5e-15 88.2 354 25.4
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 1.5e-15 88.2 246 31.3
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.5e-15 88.2 259 31.7
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.5e-15 87.4 230 27.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.5e-15 87.4 353 27.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-15 87.4 351 25.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-15 87.0 268 29.1
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.6e-15 85.5 351 25.6
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.2e-14 85.1 263 27.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.1e-14 84.3 197 30.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.8e-14 84.0 270 28.5
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 6.2e-14 82.8 223 31.4
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.4e-13 80.9 272 28.3
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.4e-13 80.9 224 30.4
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 5.2e-13 79.7 268 29.1
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.2e-13 79.7 278 28.4
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.9e-13 79.3 258 29.1
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.0e-13 79.0 358 26.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 7.6e-12 75.9 217 30.4
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 9.9e-12 75.5 283 27.9
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 9.9e-12 75.5 223 30.5
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.3e-11 75.1 312 25.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-11 74.7 262 27.5
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 1.7e-11 74.7 98 41.8
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 3.8e-11 73.6 273 27.8
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.9e-11 73.2 227 30.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 6.4e-11 72.8 243 28.0
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 8.4e-11 72.4 192 26.0
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-10 70.9 352 24.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.4e-10 70.9 248 28.6
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 2.4e-10 70.9 194 30.4
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.1e-09 67.8 97 38.1
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.7e-09 67.4 231 26.4
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 3.5e-09 67.0 185 27.6
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.6e-09 66.6 322 23.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 6.0e-09 66.2 267 28.5
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 6.0e-09 66.2 142 32.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.0e-08 65.5 185 25.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.0e-08 65.5 241 26.1
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.3e-08 65.1 218 28.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.7e-08 64.7 254 26.4
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 3.0e-08 63.9 180 30.6
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 3.0e-08 63.9 269 25.7
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 5.1e-08 63.2 261 26.1
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.9e-07 61.2 177 27.7
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.3e-07 60.1 315 26.7
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 4.3e-07 60.1 276 29.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 4.3e-07 60.1 259 25.9
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 4.3e-07 60.1 271 25.5
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 2.8e-06 57.4 178 25.8
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.6e-06 57.0 314 25.8
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.8e-06 56.6 285 24.9


User provided reference genes

Program Settings