Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.3e-54 215.3 110 100.0
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 9.2e-35 150.2 111 78.4
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 2.2e-28 129.0 119 63.0
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 3.7e-28 128.3 115 65.2
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.9e-28 127.9 108 70.4
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.6e-26 122.9 112 59.8
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.0e-25 120.2 111 64.9
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.1e-22 110.2 106 60.4
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 8.9e-22 107.1 114 54.4
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.2e-21 106.7 107 57.9
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 3.4e-21 105.1 111 55.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.4e-21 104.8 109 57.8
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.6e-21 104.0 107 57.0
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 9.9e-21 103.6 108 52.8
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.3e-20 103.2 111 61.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.8e-20 101.7 111 56.8
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.4e-20 100.9 108 56.5
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.1e-19 100.1 114 56.1
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.1e-19 100.1 108 57.4
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.1e-19 100.1 108 57.4
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 1.9e-19 99.4 112 52.7
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.4e-19 99.0 111 56.8
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 3.2e-19 98.6 115 56.5
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 9.2e-19 97.1 106 54.7
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.2e-18 96.7 111 55.9
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.2e-18 96.7 109 54.1
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 7.8e-18 94.0 113 53.1
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 7.8e-18 94.0 110 56.4
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.0e-17 93.6 110 49.1
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.0e-17 93.6 113 55.8
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.3e-17 93.2 112 50.0
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 2.3e-17 92.4 111 50.5
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 2.3e-17 92.4 116 49.1
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 8.7e-17 90.5 111 48.6
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 8.7e-17 90.5 106 53.8
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 8.7e-17 90.5 107 50.5
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.5e-16 89.7 100 57.0
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.5e-16 89.7 106 53.8
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.9e-16 89.4 106 53.8
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.5e-16 89.0 114 52.6
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 5.6e-16 87.8 110 46.4
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 7.3e-16 87.4 109 49.5
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 9.6e-16 87.0 103 49.5
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.6e-15 86.3 114 50.0
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.6e-15 85.1 110 49.1
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 3.6e-15 85.1 113 48.7
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 3.6e-15 85.1 107 48.6
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.6e-15 85.1 109 48.6
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 4.7e-15 84.7 100 54.0
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 6.2e-15 84.3 105 51.4
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 8.1e-15 84.0 74 62.2
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 8.1e-15 84.0 112 48.2
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 1.4e-14 83.2 79 50.6
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 2.4e-14 82.4 77 55.8
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 3.1e-14 82.0 116 46.6
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.2e-14 81.3 107 46.7
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.2e-14 81.3 107 46.7
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 6.9e-14 80.9 114 48.2
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.2e-13 80.1 113 46.9
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.5e-13 79.7 109 45.0
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 2.0e-13 79.3 104 48.1
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 2.0e-13 79.3 107 51.4
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 2.6e-13 79.0 112 49.1
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 4.4e-13 78.2 123 43.9
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 4.4e-13 78.2 118 47.5
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 5.8e-13 77.8 102 46.1
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 5.8e-13 77.8 105 49.5
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 7.6e-13 77.4 107 48.6
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.3e-12 76.6 93 55.9
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.2e-12 75.9 118 46.6
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 3.8e-12 75.1 116 47.4
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 4.9e-12 74.7 115 40.0
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 8.4e-12 73.9 111 45.0
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 8.4e-12 73.9 119 38.7
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.1e-11 73.6 105 43.8
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.1e-11 73.6 105 43.8
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 1.9e-11 72.8 115 41.7
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 1.9e-11 72.8 115 41.7
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 2.4e-11 72.4 115 41.7
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 2.4e-11 72.4 115 40.0
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 2.4e-11 72.4 105 43.8
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 5.4e-11 71.2 115 40.0
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 1.2e-10 70.1 119 39.5
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 1.6e-10 69.7 115 39.1
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 2.1e-10 69.3 120 40.8
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 2.1e-10 69.3 121 39.7
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.1e-10 69.3 115 42.6
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 2.7e-10 68.9 124 37.9
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.7e-10 68.9 111 40.5
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.7e-10 68.9 105 41.9
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 4.6e-10 68.2 112 40.2
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 4.6e-10 68.2 110 39.1
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.6e-10 68.2 102 47.1
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.6e-10 68.2 102 47.1
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 6.0e-10 67.8 138 39.9
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 7.8e-10 67.4 113 42.5
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 1.0e-09 67.0 120 36.7
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 1.0e-09 67.0 109 43.1
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 1.3e-09 66.6 118 42.4
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 1.7e-09 66.2 115 37.4
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 3.0e-09 65.5 121 37.2
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 6.6e-09 64.3 106 38.7
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 8.7e-09 63.9 119 37.8
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 8.7e-09 63.9 100 42.0
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 1.1e-08 63.5 119 37.0
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.1e-08 63.5 99 39.4
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.5e-08 63.2 118 37.3
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.5e-08 63.2 118 37.3
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.9e-08 62.8 67 52.2
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.6e-08 61.2 100 42.0
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 5.6e-08 61.2 136 40.4
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 7.3e-08 60.8 80 43.8
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 7.3e-08 60.8 80 43.8
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 9.6e-08 60.5 114 37.7
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 2.1e-07 59.3 127 37.0
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 6.9e-06 54.3 108 34.3


User provided reference genes

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