Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.5e-78 296.2 154 100.0
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 6.5e-71 270.8 154 90.9
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 6.2e-29 131.3 142 57.0
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 5.2e-28 128.3 136 57.4
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 6.8e-28 127.9 136 58.8
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 1.3e-26 123.6 135 57.8
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.7e-26 123.2 151 54.3
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.9e-26 122.5 160 53.8
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-25 120.2 136 54.4
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-25 120.2 136 54.4
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.6e-24 116.7 140 55.0
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 7.8e-24 114.4 136 51.5
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.6e-21 105.5 149 46.3
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.6e-21 105.5 149 46.3
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 8.1e-21 104.4 149 49.7
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.1e-20 102.4 160 43.1
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 3.1e-20 102.4 146 49.3
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.1e-20 102.4 151 45.7
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.0e-20 102.1 150 48.7
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.3e-20 101.7 129 51.9
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 2.6e-19 99.4 126 50.8
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.8e-19 98.2 149 45.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.3e-18 97.1 121 50.4
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.9e-18 95.9 149 47.0
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 2.9e-18 95.9 143 44.8
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 3.8e-18 95.5 143 44.1
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 4.9e-18 95.1 149 44.3
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 4.9e-18 95.1 124 49.2
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 8.4e-18 94.4 123 48.8
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.4e-17 92.8 121 51.2
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 4.2e-17 92.0 130 49.2
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 5.4e-17 91.7 138 46.4
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 1.2e-16 90.5 151 43.7
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.6e-16 90.1 121 48.8
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.6e-16 90.1 128 47.7
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-16 89.7 65 69.2
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-16 89.7 65 69.2
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.1e-16 89.7 121 50.4
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 4.6e-16 88.6 160 44.4
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 4.6e-16 88.6 156 42.9
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.0e-15 87.4 158 44.3
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.0e-15 87.4 158 44.3
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 1.0e-15 87.4 110 50.0
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 1.3e-15 87.0 106 52.8
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.5e-14 83.6 108 52.8
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.9e-14 83.2 158 43.0
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 1.9e-14 83.2 112 48.2
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 2.5e-14 82.8 106 47.2
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 3.3e-14 82.4 156 42.3
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.3e-14 82.4 156 42.3
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 4.3e-14 82.0 156 42.3
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 9.6e-14 80.9 109 47.7
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.1e-13 79.7 79 60.8
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.8e-13 79.3 134 45.5
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 3.6e-13 79.0 112 46.4
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 3.6e-13 79.0 79 60.8
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 3.6e-13 79.0 79 60.8
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.8e-13 78.6 114 45.6
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 8.1e-13 77.8 108 46.3
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 8.1e-13 77.8 108 50.9
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.4e-12 76.3 109 45.9
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.1e-12 75.9 131 43.5
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 4.0e-12 75.5 108 51.9
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.0e-12 75.5 66 65.2
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 2.0e-11 73.2 152 38.8
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.4e-11 72.4 74 56.8
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 5.8e-11 71.6 115 47.8
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.7e-10 70.1 107 42.1
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.7e-10 70.1 108 38.9
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.7e-10 70.1 108 38.9
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 2.9e-10 69.3 111 41.4
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 8.4e-10 67.8 50 66.0
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 8.4e-10 67.8 120 39.2
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.1e-09 67.4 106 41.5
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 1.1e-09 67.4 111 40.5
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 1.4e-09 67.0 134 38.8
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 1.4e-09 67.0 108 40.7
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 2.4e-09 66.2 120 39.2
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 9.3e-09 64.3 130 36.9
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.6e-08 63.5 48 64.6
Peaxi162Scf00074g00092 Petunia axillaris HOM05D011491 ORTHO05D009078 1.6e-08 63.5 106 42.5
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 1.6e-08 63.5 117 41.0
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 2.7e-08 62.8 100 47.0
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 3.5e-08 62.4 82 42.7
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 4.6e-08 62.0 98 40.8
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 4.6e-08 62.0 46 63.0
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 6.0e-08 61.6 103 42.7
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 6.0e-08 61.6 121 39.7
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.0e-07 60.8 108 39.8
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 1.8e-07 60.1 105 40.0
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 3.9e-07 58.9 102 41.2
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 5.1e-07 58.5 83 42.2
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 5.1e-07 58.5 137 36.5
Sabra03G0101200 Salix brachista HOM05D007727 ORTHO05D009078 6.7e-07 58.2 149 32.2
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 8.7e-07 57.8 134 38.8
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 1.1e-06 57.4 133 38.3
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.5e-06 57.0 114 32.5
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 4.3e-06 55.5 101 38.6
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 9.6e-06 54.3 113 35.4


User provided reference genes

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