Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.2e-102 375.2 198 100.0
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-73 280.4 201 79.1
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.2e-70 268.5 199 74.9
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.3e-59 231.9 297 51.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.5e-54 216.1 205 65.4
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 3.2e-54 215.7 200 65.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.2e-54 215.3 205 64.9
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 9.3e-54 214.2 205 64.4
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.1e-53 211.5 204 61.8
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.0e-52 210.7 206 62.6
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.3e-52 210.3 208 61.5
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-52 209.9 205 61.5
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.8e-52 209.9 205 62.9
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.0e-52 209.1 205 63.9
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-51 206.1 206 59.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.3e-51 205.7 203 61.1
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.3e-51 205.3 208 58.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.3e-50 203.8 200 62.0
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.6e-50 203.4 207 58.5
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.4e-49 200.3 200 62.0
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.1e-49 199.1 177 67.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.1e-49 198.7 200 59.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 9.0e-49 197.6 211 60.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.6e-48 196.1 213 58.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.6e-48 196.1 213 58.2
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.0e-47 194.1 202 61.9
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-47 193.7 201 60.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.2e-47 193.0 203 61.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.2e-47 193.0 208 59.6
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 6.5e-47 191.4 208 58.2
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 6.5e-47 191.4 206 55.8
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.4e-46 190.3 201 58.7
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.2e-45 187.2 204 57.4
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-45 186.8 184 61.4
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-45 186.8 184 61.4
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.0e-44 184.1 200 56.0
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-44 184.1 204 56.4
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-44 184.1 204 56.4
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.0e-44 184.1 227 52.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-44 183.7 204 56.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.4e-44 183.7 200 59.0
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.4e-44 183.7 201 57.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.9e-44 182.2 203 54.7
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.9e-44 182.2 205 57.1
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.8e-44 181.0 227 52.4
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.5e-43 179.5 201 56.2
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 4.3e-43 178.7 243 50.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 9.7e-43 177.6 225 54.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.3e-42 177.2 208 55.3
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.7e-42 176.8 197 53.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 3.7e-42 175.6 247 47.0
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.2e-42 174.5 204 56.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.4e-41 173.7 200 55.0
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.8e-41 173.3 220 54.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 5.3e-41 171.8 204 55.9
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.9e-40 168.3 198 54.5
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 7.7e-40 167.9 198 53.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-39 167.2 204 55.4
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-39 167.2 204 55.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.3e-39 167.2 201 50.7
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.0e-39 165.2 200 54.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.1e-38 164.1 189 55.6
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 7.2e-38 161.4 198 52.0
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.2e-37 160.6 206 52.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.1e-37 159.8 190 53.2
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.0e-36 157.5 198 51.0
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.8e-36 156.8 199 51.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.3e-36 156.4 265 43.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.3e-36 156.4 265 43.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.0e-35 153.3 204 50.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.6e-35 152.9 206 50.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-35 152.5 198 51.0
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 5.7e-35 151.8 192 55.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.8e-34 148.7 186 53.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.1e-33 147.5 187 51.9
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.2e-32 144.1 200 51.0
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.6e-32 142.9 120 68.3
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.5e-32 142.5 118 66.9
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.0e-31 141.0 120 67.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 3.8e-31 139.0 212 46.7
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.5e-31 137.9 247 41.7
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-30 137.1 120 66.7
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-30 137.1 120 66.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.5e-30 137.1 209 51.2
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.9e-30 136.7 205 48.8
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.9e-30 136.7 193 48.7
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.5e-30 136.3 255 40.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 4.2e-30 135.6 130 62.3
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 4.2e-30 135.6 120 65.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.5e-30 135.2 120 66.7
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.5e-30 135.2 121 64.5
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.2e-29 134.0 120 64.2
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.2e-29 134.0 115 66.1
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.3e-28 129.8 186 46.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.0e-28 129.0 202 44.1
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 4.4e-27 125.6 136 52.9
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 5.7e-27 125.2 183 45.4
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.7e-27 124.4 206 43.7
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.2e-26 123.2 293 37.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 8.2e-26 121.3 177 48.6
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.8e-25 120.2 207 41.5
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-25 120.2 206 44.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 4.1e-25 119.0 175 48.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.2e-24 117.5 214 43.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.5e-24 115.5 211 42.2
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.5e-24 115.5 308 32.8
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 5.9e-24 115.2 174 46.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 7.7e-24 114.8 257 35.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 8.5e-23 111.3 203 41.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 4.2e-22 109.0 109 56.0
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 2.1e-21 106.7 99 60.6
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.2e-19 100.9 205 42.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.0e-19 100.1 193 39.9
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.4e-19 99.4 196 42.9
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 4.4e-19 99.0 173 40.5
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.7e-19 98.6 155 42.6
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 7.5e-19 98.2 182 46.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.8e-19 97.8 152 44.7
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.8e-18 95.5 198 40.9
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.8e-17 93.6 190 41.6
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.1e-17 92.8 201 39.3
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.7e-16 89.7 198 40.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 3.5e-16 89.4 120 49.2
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 7.7e-16 88.2 194 39.2
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.3e-15 87.4 202 38.1
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 2.2e-15 86.7 139 43.2
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 7.2e-14 81.6 73 64.4
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.7e-13 79.0 108 45.4
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.7e-13 79.0 108 45.4
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.7e-13 79.0 108 45.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 6.1e-13 78.6 77 57.1
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 4.0e-12 75.9 121 44.6
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 6.8e-12 75.1 76 57.9
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 8.8e-12 74.7 154 38.3
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-11 74.3 120 45.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-11 73.2 123 43.9
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.4e-11 72.4 120 44.2
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.7e-11 72.0 122 44.3
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.7e-10 70.5 119 42.0
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 4.9e-10 68.9 58 63.8
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 6.3e-10 68.6 57 64.9
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 8.3e-10 68.2 82 53.7
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 8.3e-10 68.2 82 53.7
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 2.7e-08 63.2 79 50.6
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.0e-07 61.2 60 53.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 3.8e-07 59.3 56 55.4
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 1.1e-06 57.8 78 47.4
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.3e-06 55.1 42 64.3


User provided reference genes

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