Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 9.5e-190 666.8 358 100.0
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.9e-135 485.3 360 72.2
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.3e-134 482.3 344 74.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 7.2e-129 464.5 378 65.9
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 9.7e-126 454.1 341 70.4
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 2.8e-125 452.6 288 77.1
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.7e-125 452.2 285 76.5
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.8e-125 451.8 366 66.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 8.2e-125 451.1 355 69.3
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 8.2e-125 451.1 361 67.0
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.1e-124 450.7 285 76.8
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.1e-124 450.7 358 65.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.4e-124 449.5 286 76.9
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.3e-124 448.4 368 66.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.0e-123 446.4 360 65.3
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.6e-123 446.0 365 66.6
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.4e-123 445.7 290 77.2
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.4e-123 445.7 362 64.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.3e-122 443.7 287 76.3
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.3e-122 443.7 362 64.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.7e-122 443.4 367 68.9
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.8e-122 442.2 364 64.3
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.5e-121 439.5 364 64.8
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 4.2e-121 438.7 369 65.9
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.5e-121 438.3 371 68.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 7.2e-121 438.0 362 65.2
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.2e-120 437.2 286 74.1
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.1e-120 436.4 358 65.4
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.0e-119 434.1 286 75.2
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.0e-119 434.1 361 64.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.3e-119 433.0 336 65.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.3e-119 433.0 367 62.7
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.9e-119 432.2 285 73.7
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 5.2e-119 431.8 353 65.7
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.1e-118 430.6 363 62.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.0e-118 429.9 286 75.2
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-118 429.9 286 74.8
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.0e-118 429.9 364 61.3
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.6e-118 429.5 286 74.8
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.6e-118 429.5 286 74.8
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.6e-118 429.5 286 74.8
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 3.3e-118 429.1 286 74.5
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.4e-118 428.7 285 72.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.4e-118 428.7 343 65.9
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 5.7e-118 428.3 286 72.0
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-117 426.8 354 65.0
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.7e-117 426.8 369 62.1
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.7e-117 426.8 319 67.1
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.8e-117 426.0 355 63.4
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.7e-117 425.6 338 65.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.2e-117 424.5 360 62.2
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 9.1e-116 421.0 267 76.8
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 3.5e-115 419.1 358 61.2
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.3e-114 417.2 345 63.5
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.8e-114 415.6 366 61.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 5.0e-114 415.2 367 60.5
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.1e-113 414.1 355 60.6
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.5e-113 413.7 342 62.9
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.5e-113 412.9 339 64.9
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.6e-112 410.2 287 70.7
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.1e-112 409.8 365 61.1
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 4.7e-112 408.7 287 69.7
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.3e-111 406.4 364 62.1
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.3e-111 406.4 287 70.7
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 3.0e-111 406.0 355 60.0
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 4.0e-111 405.6 361 62.6
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 6.7e-111 404.8 358 59.5
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 6.7e-111 404.8 362 60.8
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.8e-111 404.4 322 65.2
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 8.8e-111 404.4 359 60.2
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.5e-110 403.7 285 70.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 2.0e-110 403.3 354 60.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.6e-110 402.9 358 60.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.0e-108 394.8 282 68.1
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.5e-105 386.3 358 62.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.6e-104 383.6 285 66.7
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.6e-104 382.5 282 67.0
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.8e-103 378.3 261 70.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 5.4e-100 368.6 260 66.9
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 7.0e-100 368.2 294 62.9
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.7e-98 363.6 288 62.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 8.6e-98 361.3 258 65.5
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.9e-97 360.1 376 53.5
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.6e-96 355.9 261 67.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.0e-95 354.4 258 65.9
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.0e-95 354.4 291 59.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.9e-95 351.3 248 69.8
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.2e-94 350.9 248 69.0
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.7e-93 345.9 260 63.8
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.3e-93 344.7 260 63.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-92 344.0 260 63.5
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.2e-91 340.9 269 63.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.5e-91 339.3 259 63.3
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.3e-90 337.4 260 62.7
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.7e-90 337.0 251 66.9
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 5.0e-90 335.5 262 63.0
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 6.6e-90 335.1 294 62.2
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.6e-90 334.7 246 65.9
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-89 334.3 257 63.4
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.3e-89 332.4 257 62.6
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.1e-88 330.1 257 63.8
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.8e-88 329.7 257 61.9
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 8.0e-88 328.2 246 65.4
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.0e-87 326.2 260 61.2
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.5e-86 323.9 258 59.3
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.0e-86 323.6 262 59.5
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.7e-85 320.5 258 59.7
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.7e-85 319.3 258 59.3
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-85 319.3 259 57.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-85 319.3 259 57.5
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.7e-85 319.3 263 58.9
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.7e-85 319.3 306 53.9
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.4e-84 316.6 263 58.6
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.4e-84 315.5 262 58.8
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 6.0e-83 312.0 235 63.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.0e-82 311.2 259 58.3
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-82 310.5 233 65.2
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 8.6e-82 308.1 260 59.6
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-79 300.4 259 54.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-79 300.4 259 54.4
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.9e-79 298.1 248 65.3
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-78 297.4 259 53.7
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-78 297.4 259 53.7
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.8e-78 294.7 233 59.2
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.3e-77 294.3 201 71.1
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.4e-76 290.0 255 56.5
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 3.3e-73 279.6 257 56.8
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 5.6e-73 278.9 256 52.0
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.1e-71 274.6 259 54.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.4e-69 265.4 232 56.0
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.6e-67 260.8 169 74.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.3e-65 251.9 237 54.4
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-62 243.8 248 50.0
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 7.6e-62 241.9 163 69.9
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 2.2e-61 240.4 198 60.6
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-61 239.2 258 48.8
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-60 238.0 258 48.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 6.0e-59 232.3 273 48.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.1e-56 223.8 224 51.8
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.6e-56 223.0 160 63.8
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 8.1e-56 221.9 403 36.7
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.1e-55 219.9 183 57.4
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.4e-52 209.1 144 70.8
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-50 204.5 251 44.2
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.3e-50 204.5 129 74.4
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.0e-50 203.4 146 65.8
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-49 201.4 170 56.5
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 7.4e-41 172.2 224 45.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.0e-39 166.4 203 50.2
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 9.9e-38 161.8 241 39.4
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 9.3e-36 155.2 137 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.8e-32 142.9 202 42.1
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.9e-28 131.0 178 45.5
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.6e-27 127.9 247 33.6
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.3e-26 124.0 140 62.1
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-24 117.1 122 51.6
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.7e-24 116.7 114 50.9
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-21 108.6 91 56.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.2e-20 103.2 96 59.4
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.1e-17 95.1 181 34.3
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-17 94.0 227 30.0
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.1e-15 88.6 63 66.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-15 88.2 65 64.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 1.5e-14 84.7 69 60.9
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 6.5e-13 79.3 68 57.4
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.9e-12 77.8 43 86.0
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.3e-10 70.9 66 51.5
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.9e-10 70.1 68 51.5
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 3.9e-10 70.1 76 48.7
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 4.4e-09 66.6 271 27.7
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 4.4e-09 66.6 58 58.6
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 5.7e-09 66.2 68 50.0


User provided reference genes

Program Settings