Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.0e-260 902.1 521 100.0
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.0e-201 704.5 515 83.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 7.1e-186 654.4 523 78.0
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.9e-179 631.7 539 73.1
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 3.9e-176 622.1 476 77.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.6e-174 616.7 463 78.2
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 6.2e-174 614.8 531 72.5
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 4.0e-173 612.1 473 75.7
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.5e-172 610.1 434 81.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.5e-172 610.1 469 77.4
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.0e-172 609.8 478 75.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.2e-171 606.3 456 77.9
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 4.9e-171 605.1 463 77.3
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 4.9e-171 605.1 450 78.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.1e-170 604.0 438 82.6
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.0e-168 597.4 514 71.2
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.3e-168 597.0 472 75.6
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.0e-168 595.9 522 73.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 8.7e-168 594.3 531 68.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 4.1e-165 585.5 553 67.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 4.1e-165 585.5 473 73.2
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.1e-165 585.5 462 78.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 6.9e-165 584.7 455 78.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-164 583.9 471 77.1
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.0e-164 583.2 427 80.8
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.6e-164 582.8 481 67.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 3.4e-164 582.4 533 68.3
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 4.5e-164 582.0 546 66.3
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.9e-163 579.3 556 66.9
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 6.5e-163 578.2 463 77.3
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.1e-162 577.4 426 79.3
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 3.2e-162 575.9 449 78.8
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.2e-162 575.5 514 71.8
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.7e-161 572.8 462 75.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.6e-161 572.4 527 71.2
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 6.1e-161 571.6 551 63.3
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.0e-160 570.9 475 75.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.0e-160 570.9 475 75.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.4e-160 570.5 473 71.9
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.0e-160 569.3 594 58.2
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.9e-160 568.9 465 75.9
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.3e-159 565.8 403 81.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.7e-158 563.5 500 71.6
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.8e-158 562.8 394 87.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.8e-158 562.8 497 70.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.3e-158 561.6 524 70.8
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 8.2e-158 561.2 498 70.1
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.8e-157 560.1 527 68.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 3.1e-157 559.3 471 76.0
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 5.3e-157 558.5 476 71.4
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 6.9e-157 558.1 535 68.8
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.6e-156 556.2 484 73.8
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 3.4e-156 555.8 520 71.0
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.0e-155 554.3 468 72.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.0e-155 554.3 436 78.4
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.7e-155 553.5 557 67.3
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-155 552.7 520 70.2
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.8e-155 552.4 423 77.3
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 5.0e-155 552.0 521 69.9
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 6.5e-155 551.6 515 68.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 7.2e-154 548.1 615 55.8
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 9.4e-154 547.7 526 67.1
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.1e-153 546.6 524 66.6
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 6.1e-153 545.0 492 71.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.8e-152 543.5 463 70.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.9e-152 542.3 502 69.1
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 6.7e-152 541.6 402 79.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.0e-151 540.0 531 66.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 3.3e-151 539.3 449 74.6
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.7e-151 538.5 538 63.9
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.7e-151 537.7 485 70.3
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.7e-150 537.0 449 74.2
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-150 535.4 454 73.8
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 8.2e-150 534.6 381 81.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.1e-149 532.7 485 70.7
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.0e-148 530.0 490 67.1
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.6e-148 529.6 560 63.0
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 7.7e-148 528.1 552 64.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.7e-147 526.9 520 67.5
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 8.5e-147 524.6 463 69.5
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 7.2e-146 521.5 529 64.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.6e-145 519.2 483 68.7
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.0e-144 517.7 461 69.4
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.0e-144 517.7 461 69.4
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-144 516.2 521 66.6
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-144 516.2 523 67.3
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 6.7e-144 515.0 567 59.8
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.5e-143 513.8 456 69.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.0e-143 513.5 556 60.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.7e-143 511.9 456 69.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.2e-142 510.0 547 61.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 4.8e-142 508.8 540 61.9
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-141 507.3 540 65.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.1e-141 506.1 472 69.5
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 7.0e-141 505.0 549 60.3
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 5.9e-140 501.9 525 63.2
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.9e-140 501.9 480 66.7
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.2e-139 500.0 356 77.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 6.5e-139 498.4 504 63.5
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.1e-138 497.7 531 63.3
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 5.5e-138 495.4 543 55.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.2e-137 494.2 522 65.3
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.7e-137 493.0 522 63.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.0e-136 489.6 502 66.3
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 8.8e-136 488.0 524 66.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.2e-135 487.6 469 66.3
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.7e-135 484.6 412 74.0
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.0e-128 464.5 422 70.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.8e-125 453.8 470 63.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.9e-122 443.7 400 69.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 6.1e-121 438.7 479 55.3
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 8.0e-121 438.3 466 64.4
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 8.0e-121 438.3 415 67.5
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 4.1e-117 426.0 519 59.3
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.7e-116 423.3 418 66.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.5e-114 414.8 333 75.1
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.2e-112 409.1 421 68.9
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.4e-109 401.0 389 62.7
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 3.1e-104 383.3 466 57.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.0e-103 380.6 407 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 7.3e-98 362.1 424 56.4
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.2e-97 361.3 332 63.3
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.8e-92 342.0 366 67.8
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-91 341.7 344 68.6
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.1e-88 331.6 279 61.6
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 4.2e-85 319.7 606 42.6
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.7e-84 317.0 390 54.1
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.3e-75 287.3 244 62.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.1e-74 285.0 292 70.2
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 7.3e-74 282.3 475 43.8
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.4e-69 267.3 378 42.1
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.3e-56 223.0 152 71.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-51 208.4 141 70.9
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-51 206.1 141 70.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-50 204.5 141 69.5
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 3.3e-50 203.8 131 79.4
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 8.5e-46 189.1 179 57.0
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-45 188.7 168 60.1
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-44 183.0 134 65.7
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-43 181.8 134 65.7
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-37 161.0 128 63.3
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-36 158.3 171 51.5
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.7e-34 149.8 95 83.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 8.5e-30 136.0 461 26.9
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.5e-29 133.3 106 61.3
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-27 129.0 74 81.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 8.2e-25 119.4 91 62.6
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.1e-20 104.8 56 89.3
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 2.2e-17 94.7 209 32.5
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.4e-16 91.3 68 70.6
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.4e-16 90.1 55 76.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-13 82.4 122 43.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.7e-12 77.8 71 66.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.3e-11 74.7 52 76.9
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 7.5e-10 69.7 57 68.4
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 9.8e-10 69.3 123 39.0
QL02p028181 Quercus lobata HOM05D004623 ORTHO05D005100 8.6e-06 56.2 123 41.5


User provided reference genes

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