Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.7e-230 800.8 396 100.0
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.6e-198 696.0 396 87.1
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 7.0e-194 680.6 393 85.5
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.9e-178 629.4 393 79.4
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.6e-177 626.3 397 76.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 1.3e-176 623.2 393 76.6
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.7e-176 622.9 393 76.1
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-176 622.9 393 76.1
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 8.7e-176 620.5 396 78.3
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.1e-175 620.2 393 75.6
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.2e-174 616.7 393 75.8
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.4e-173 613.2 393 76.8
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.9e-173 610.9 409 72.9
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 9.0e-173 610.5 393 75.3
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.9e-171 604.7 395 74.4
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 4.9e-171 604.7 394 74.9
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.4e-170 602.4 393 73.5
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.6e-169 599.7 393 75.1
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 4.6e-169 598.2 365 78.6
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.0e-168 597.0 424 71.2
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.3e-168 596.7 393 74.3
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 6.6e-168 594.3 401 72.8
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 6.6e-168 594.3 390 74.6
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.1e-167 593.6 401 72.1
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 9.6e-167 590.5 397 72.0
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.1e-166 589.3 393 73.3
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.1e-165 587.0 370 75.4
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 9.0e-165 583.9 398 71.6
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 9.0e-165 583.9 365 75.3
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.0e-164 582.8 368 75.8
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.6e-164 582.4 394 72.3
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 3.4e-164 582.0 378 74.1
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.4e-164 582.0 393 74.0
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.5e-164 581.6 400 71.2
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 7.6e-164 580.9 397 71.8
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 9.9e-164 580.5 391 72.6
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 1.3e-163 580.1 365 74.8
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.7e-163 579.7 401 70.3
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.2e-163 579.3 390 73.1
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.9e-163 578.9 393 74.0
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.8e-163 578.6 393 73.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 3.8e-163 578.6 523 59.7
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.9e-163 578.2 399 70.7
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.1e-162 577.0 365 75.9
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.4e-162 576.6 401 69.8
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 4.2e-162 575.1 365 75.3
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.6e-161 573.2 365 74.2
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.6e-161 573.2 365 74.5
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.6e-161 571.6 399 70.9
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 6.0e-161 571.2 399 69.2
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 6.0e-161 571.2 411 69.3
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 3.9e-160 568.5 388 72.2
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 5.1e-160 568.2 372 72.8
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.1e-160 568.2 392 71.4
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 8.7e-160 567.4 404 68.8
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.1e-159 567.0 401 69.1
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.9e-159 566.2 393 69.5
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 5.6e-159 564.7 394 69.0
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 5.6e-159 564.7 393 69.5
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 7.4e-159 564.3 357 76.2
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 7.4e-159 564.3 370 74.3
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 2.8e-158 562.4 396 67.7
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.7e-158 562.0 429 66.2
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.8e-158 561.6 396 68.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.1e-157 560.5 396 68.2
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.1e-157 560.5 382 70.9
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.4e-157 559.3 332 78.9
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.1e-157 558.9 399 67.7
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.1e-157 558.9 392 70.4
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 5.3e-157 558.1 440 65.5
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.5e-156 556.6 369 70.7
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 4.5e-156 555.1 393 67.4
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 4.5e-156 555.1 393 67.4
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 5.8e-156 554.7 396 66.9
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 7.6e-156 554.3 399 67.4
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 9.9e-156 553.9 387 69.8
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.3e-155 553.5 398 67.1
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 1.3e-155 553.5 402 67.9
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 2.2e-155 552.7 394 67.5
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 2.2e-155 552.7 394 67.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 6.4e-155 551.2 394 67.3
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 8.4e-155 550.8 393 70.0
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.9e-154 549.7 394 67.0
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 4.2e-154 548.5 393 66.2
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.2e-153 547.0 527 56.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-152 542.7 396 66.2
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.0e-152 542.3 396 66.2
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 3.9e-152 542.0 395 65.8
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.1e-151 540.4 364 69.5
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-151 540.4 380 67.6
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.9e-151 539.7 396 65.9
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.9e-151 539.7 396 65.9
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 3.7e-150 535.4 399 66.2
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 4.8e-150 535.0 392 64.5
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 2.4e-149 532.7 328 77.4
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.3e-147 526.9 361 69.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.4e-147 524.2 379 67.5
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 7.1e-146 521.2 380 66.8
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.3e-144 516.9 419 63.2
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.3e-144 516.2 420 61.9
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 3.9e-144 515.4 406 67.2
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 5.1e-144 515.0 379 66.0
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.1e-143 513.8 393 67.2
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.5e-143 512.7 345 71.0
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.5e-143 512.7 345 71.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 3.3e-143 512.3 372 68.5
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.7e-143 511.5 332 73.8
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.6e-142 510.0 354 69.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-141 506.5 352 67.6
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.5e-140 503.4 393 66.2
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.6e-140 502.7 394 63.5
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.5e-139 497.7 343 70.0
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.2e-134 483.0 330 68.5
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.6e-132 476.1 328 70.7
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.0e-131 474.2 349 67.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.9e-131 472.6 328 70.4
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 2.9e-131 472.6 292 75.0
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 2.5e-130 469.5 392 62.2
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 4.2e-130 468.8 414 57.7
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.0e-127 459.9 347 65.1
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 9.7e-127 457.6 367 57.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 6.3e-126 454.9 311 70.4
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 5.5e-122 441.8 354 59.3
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.6e-121 440.3 366 54.4
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 6.7e-120 434.9 354 62.4
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 4.4e-119 432.2 273 78.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 4.8e-118 428.7 394 56.3
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.9e-114 416.8 254 81.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.1e-113 411.8 392 53.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.5e-106 390.6 217 84.3
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 5.5e-106 388.7 372 51.6
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 8.0e-105 384.8 247 72.9
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.6e-103 379.8 301 61.1
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.1e-97 360.1 208 82.2
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.9e-77 293.9 360 41.4
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.9e-74 283.9 177 75.7
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.2e-63 248.1 297 42.4
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.0e-59 235.0 333 40.5
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.3e-51 207.2 176 60.8
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 1.3e-38 164.9 106 75.5
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.5e-37 160.6 98 74.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 5.7e-34 149.4 85 77.6
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 3.1e-24 117.1 95 62.1
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.0e-23 114.4 77 70.1
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 7.2e-21 105.9 108 50.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.1e-18 98.6 93 50.5
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.3e-18 97.1 63 74.6
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.4e-16 90.9 55 76.4
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.4e-16 90.9 55 76.4
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.4e-16 90.9 55 76.4
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.9e-16 89.4 55 74.5
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.4e-15 87.0 54 74.1
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 5.5e-13 79.7 54 64.8
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.0e-11 75.5 73 60.3
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 1.4e-08 65.1 32 87.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 7.7e-07 59.3 59 50.8
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.5e-06 55.8 35 71.4
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.5e-06 55.8 35 71.4


User provided reference genes

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