Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.3e-55 219.5 114 100.0
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.8e-37 157.1 91 86.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.3e-36 156.4 89 88.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.3e-36 155.6 91 85.7
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.5e-35 152.9 89 86.5
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.5e-35 152.9 91 85.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.3e-35 151.8 89 85.4
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.6e-35 151.0 89 86.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 9.5e-35 150.2 89 86.5
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 9.5e-35 150.2 89 86.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.5e-35 150.2 89 85.4
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.2e-34 149.8 91 85.7
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.2e-34 149.8 88 85.2
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.2e-34 149.8 89 84.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.6e-34 149.4 89 85.4
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.6e-34 149.4 89 85.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.6e-34 149.4 89 85.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.1e-34 149.1 91 82.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.1e-34 149.1 89 84.3
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-34 148.7 86 87.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.8e-34 148.7 89 84.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 2.8e-34 148.7 89 84.3
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.6e-34 148.3 86 87.2
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.6e-34 148.3 88 85.2
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 3.6e-34 148.3 86 86.0
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 3.6e-34 148.3 90 85.6
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.7e-34 147.9 86 86.0
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 4.7e-34 147.9 88 84.1
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 6.2e-34 147.5 91 82.4
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 6.2e-34 147.5 88 84.1
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 6.2e-34 147.5 89 84.3
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-33 146.7 91 82.4
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.1e-33 146.7 91 82.4
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.1e-33 146.7 91 84.6
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.1e-33 146.7 91 82.4
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.1e-33 146.7 89 84.3
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-33 146.4 90 82.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-33 146.4 90 82.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.8e-33 146.0 92 83.7
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.8e-33 146.0 91 81.3
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-33 146.0 91 79.1
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.8e-33 146.0 89 84.3
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.3e-33 145.6 88 83.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.3e-33 145.6 88 83.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.3e-33 145.6 89 84.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.1e-33 145.2 91 81.3
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.1e-33 145.2 86 83.7
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 4.0e-33 144.8 91 81.3
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 4.0e-33 144.8 91 81.3
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.0e-33 144.8 86 84.9
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 4.0e-33 144.8 90 81.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.0e-33 144.8 89 82.0
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.2e-33 144.4 86 84.9
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 5.2e-33 144.4 91 80.2
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 5.2e-33 144.4 91 80.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 6.8e-33 144.1 86 83.7
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 6.8e-33 144.1 91 80.2
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 6.8e-33 144.1 86 82.6
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 6.8e-33 144.1 86 82.6
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 6.8e-33 144.1 91 81.3
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 79.1
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 80.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 79.1
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 8.9e-33 143.7 94 76.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 80.2
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 79.1
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.9e-33 143.7 86 82.6
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 8.9e-33 143.7 86 82.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 8.9e-33 143.7 91 79.1
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 8.9e-33 143.7 86 83.7
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 8.9e-33 143.7 86 84.9
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-32 143.3 86 82.6
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-32 143.3 86 82.6
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.2e-32 143.3 86 82.6
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.5e-32 142.9 91 80.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.5e-32 142.9 86 84.9
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.5e-32 142.9 86 84.9
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.5e-32 142.9 86 84.9
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.5e-32 142.9 91 81.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.0e-32 142.5 88 80.7
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.0e-32 142.5 86 83.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-32 142.5 91 81.3
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-32 142.5 91 81.3
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.0e-32 142.5 91 81.3
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.6e-32 142.1 91 79.1
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.4e-32 141.7 90 82.2
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 3.4e-32 141.7 91 76.9
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 3.4e-32 141.7 86 83.7
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 4.4e-32 141.4 86 82.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 4.4e-32 141.4 86 82.6
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 5.8e-32 141.0 86 81.4
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 5.8e-32 141.0 86 81.4
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 7.6e-32 140.6 88 80.7
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 7.6e-32 140.6 88 78.4
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.3e-31 139.8 88 81.8
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.3e-31 139.8 90 80.0
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.3e-31 139.8 86 81.4
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.7e-31 139.4 89 79.8
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.7e-31 139.4 89 77.5
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.7e-31 139.4 91 76.9
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.2e-31 139.0 86 80.2
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.2e-31 139.0 86 80.2
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.9e-31 138.7 88 78.4
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.8e-31 138.3 86 81.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.9e-31 137.9 88 79.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 4.9e-31 137.9 88 79.5
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.4e-31 137.5 88 77.3
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.4e-31 137.5 88 77.3
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 6.4e-31 137.5 86 82.6
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 8.4e-31 137.1 86 81.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.4e-31 137.1 85 81.2
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 8.4e-31 137.1 86 80.2
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.1e-30 136.7 89 77.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.1e-30 136.7 88 77.3
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.1e-30 136.7 91 78.0
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.4e-30 136.3 91 74.7
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.9e-30 136.0 85 82.4
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.4e-30 135.6 88 76.1
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.4e-30 135.6 88 76.1
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 5.4e-30 134.4 86 76.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.4e-30 134.4 86 80.2
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 5.4e-30 134.4 86 76.7
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 5.4e-30 134.4 91 73.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 9.2e-30 133.7 89 78.7
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.2e-29 133.3 89 75.3
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.6e-29 132.9 86 80.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.6e-29 132.9 89 73.0
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.1e-29 132.5 88 75.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.6e-29 131.3 85 75.3
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.6e-29 131.3 89 74.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 6.0e-29 131.0 85 76.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 6.0e-29 131.0 89 71.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.7e-28 129.4 89 77.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.0e-28 128.6 127 58.3
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.9e-28 128.3 90 75.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 9.6e-27 123.6 82 73.2
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.1e-26 122.5 85 69.4
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.4e-25 119.0 92 64.1
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 4.0e-25 118.2 83 74.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.0e-25 118.2 73 84.9
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 4.0e-25 118.2 73 84.9
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 2.0e-24 115.9 86 69.8
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 5.8e-24 114.4 86 62.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.9e-23 112.1 70 80.0
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.5e-21 105.1 70 75.7
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.3e-20 103.2 62 80.6
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.3e-20 102.4 61 83.6
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 6.2e-18 94.4 71 67.6
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 6.9e-17 90.9 83 59.0
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 6.9e-17 90.9 83 59.0
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 3.8e-15 85.1 54 77.8
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.1e-14 83.6 46 82.6
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.4e-14 83.2 45 88.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.9e-14 82.8 80 47.5
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.1e-13 79.3 47 76.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 3.5e-13 78.6 82 50.0
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.6e-13 78.2 44 79.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.3e-10 70.1 51 74.5
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-09 66.6 85 49.4
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.8e-09 66.2 45 80.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-08 63.5 48 70.8
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-08 63.5 48 70.8
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.7e-07 59.7 41 78.0
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.7e-07 59.7 57 59.6
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 6.4e-07 57.8 41 73.2


User provided reference genes

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