Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.8e-74 282.0 153 100.0
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 5.0e-63 244.6 132 83.3
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.1e-62 243.4 132 84.1
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.1e-62 243.4 131 82.4
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 1.9e-62 242.7 132 82.6
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-61 240.0 132 80.3
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 4.7e-61 238.0 129 80.6
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.7e-61 238.0 131 82.4
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 6.1e-61 237.7 129 82.9
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 8.0e-61 237.3 129 82.2
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 8.0e-61 237.3 129 82.9
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 8.0e-61 237.3 129 81.4
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.0e-60 236.9 129 81.4
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 1.0e-60 236.9 129 82.2
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.4e-60 236.5 131 84.0
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 2.3e-60 235.7 129 82.9
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 3.0e-60 235.3 129 82.2
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 4.0e-60 235.0 131 80.2
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 6.7e-60 234.2 129 84.5
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 6.7e-60 234.2 131 80.2
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 6.7e-60 234.2 132 78.8
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.7e-60 234.2 132 78.8
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.7e-60 234.2 132 78.8
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 8.8e-60 233.8 129 83.7
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 8.8e-60 233.8 129 80.6
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.5e-59 233.0 132 78.0
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.6e-59 232.3 132 78.0
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.3e-59 231.9 129 79.8
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 5.7e-59 231.1 174 66.7
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 9.7e-59 230.3 129 79.1
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.3e-58 229.9 131 78.6
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.3e-58 229.9 129 79.1
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.7e-58 229.6 129 77.5
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.8e-58 228.8 131 78.6
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 4.8e-58 228.0 129 76.7
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 4.8e-58 228.0 129 76.7
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 4.8e-58 228.0 129 78.3
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 1.1e-57 226.9 132 75.0
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 1.4e-57 226.5 129 79.1
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 2.4e-57 225.7 132 76.5
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 3.1e-57 225.3 129 76.7
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 5.3e-57 224.6 129 75.2
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 7.0e-57 224.2 129 76.0
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 9.1e-57 223.8 132 73.5
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.2e-56 223.4 129 76.7
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.2e-56 223.4 130 77.7
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.2e-56 223.4 132 76.5
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.6e-56 223.0 131 77.9
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.6e-56 223.0 131 74.8
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 2.0e-56 222.6 132 75.8
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.5e-56 221.9 132 77.3
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.5e-56 221.9 130 77.7
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 3.5e-56 221.9 129 76.0
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 4.5e-56 221.5 129 76.7
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 4.5e-56 221.5 129 76.7
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 5.9e-56 221.1 129 76.0
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 7.7e-56 220.7 131 77.9
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 7.7e-56 220.7 129 77.5
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 7.7e-56 220.7 131 76.3
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.0e-55 220.3 129 76.0
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 2.9e-55 218.8 132 75.0
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 3.8e-55 218.4 129 74.4
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 6.5e-55 217.6 131 76.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 6.5e-55 217.6 131 76.3
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 8.5e-55 217.2 132 72.0
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.1e-54 216.9 131 76.3
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 1.1e-54 216.9 132 72.0
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 7.2e-54 214.2 129 73.6
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 7.2e-54 214.2 131 78.6
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 1.6e-53 213.0 132 72.7
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 2.1e-53 212.6 129 73.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 8.0e-53 210.7 129 73.6
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.4e-52 209.9 129 72.9
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.3e-52 209.1 129 71.3
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 6.8e-52 207.6 132 72.7
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.6e-51 205.7 133 72.2
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.8e-50 202.2 129 69.0
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 3.7e-50 201.8 129 71.3
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 6.3e-50 201.1 129 70.5
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 4.1e-49 198.4 129 69.0
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 7.0e-49 197.6 130 68.5
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 2.7e-48 195.7 223 47.1
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.1e-46 190.3 129 65.1
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.2e-46 187.6 129 65.9
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 9.4e-46 187.2 129 65.9
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.2e-45 186.8 107 75.7
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 4.4e-43 178.3 130 60.8
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 4.4e-43 178.3 130 60.8
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 4.4e-43 178.3 130 60.8
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 7.5e-43 177.6 130 61.5
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 7.5e-43 177.6 130 60.8
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 7.5e-43 177.6 130 60.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 2.2e-42 176.0 126 63.5
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 4.9e-42 174.9 129 62.8
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 1.4e-41 173.3 129 60.5
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.4e-41 173.3 126 61.9
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 1.4e-41 173.3 126 61.9
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.4e-41 173.3 133 59.4
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.4e-41 173.3 123 61.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.8e-41 172.9 133 59.4
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.4e-41 172.6 126 61.9
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 5.9e-40 167.9 130 60.0
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 1.7e-39 166.4 154 53.9
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.4e-36 156.8 83 84.3
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.8e-36 156.4 81 82.7
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 4.0e-36 155.2 131 56.5
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 6.8e-36 154.5 135 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 4.4e-35 151.8 129 54.3
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 4.4e-35 151.8 133 53.4
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.7e-34 149.8 129 54.3
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 4.1e-33 145.2 104 60.6
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 5.4e-33 144.8 129 51.9
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 7.8e-32 141.0 132 50.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.1e-30 137.1 82 70.7
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.8e-28 129.8 76 76.3
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 8.3e-26 120.9 66 78.8
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 6.6e-23 111.3 106 51.9
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.4e-20 103.6 72 70.8
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 5.4e-17 91.7 121 41.3
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.1e-16 89.7 56 58.9
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.8e-12 76.6 48 75.0
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 6.8e-12 74.7 48 70.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.8e-10 68.9 53 56.6
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.4e-09 66.2 47 61.7
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 9.2e-09 64.3 43 67.4


User provided reference genes

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