Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 7.6e-264 913.3 467 100.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 2.4e-108 396.7 565 46.9
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.0e-102 377.1 574 45.5
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 4.4e-78 296.2 495 43.4
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 3.2e-60 236.9 466 37.8
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 3.5e-59 233.4 466 38.4
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 1.0e-58 231.9 470 37.2
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 9.6e-57 225.3 468 36.5
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 2.8e-56 223.8 457 36.3
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 1.4e-52 211.5 482 36.3
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 4.2e-52 209.9 475 35.4
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 5.4e-52 209.5 517 34.2
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 3.6e-48 196.8 464 36.2
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 6.2e-48 196.1 478 34.7
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 5.3e-47 193.0 467 35.3
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 4.4e-46 189.9 490 33.9
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 9.9e-46 188.7 473 35.1
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 9.9e-46 188.7 474 35.4
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.8e-45 186.8 458 34.3
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 4.9e-45 186.4 462 35.5
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.4e-44 184.9 446 34.8
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.9e-44 184.5 465 35.7
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 9.3e-44 182.2 459 35.7
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 8.7e-42 175.6 477 32.9
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 3.3e-41 173.7 475 32.8
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 2.4e-39 167.5 463 33.7
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 6.9e-39 166.0 466 32.2
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 4.5e-38 163.3 465 34.6
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 5.8e-38 162.9 471 34.6
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 3.5e-35 153.7 479 33.0
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 8.7e-34 149.1 460 32.2
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 8.7e-34 149.1 354 34.7
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 1.5e-33 148.3 458 31.2
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 3.3e-33 147.1 470 32.6
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 3.3e-33 147.1 470 30.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 3.3e-33 147.1 508 32.1
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 4.3e-33 146.7 461 31.2
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.3e-32 145.2 441 31.3
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.1e-32 144.4 444 31.3
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 2.8e-32 144.1 463 32.4
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 4.8e-32 143.3 479 31.5
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 4.8e-32 143.3 467 30.4
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 1.8e-31 141.4 473 29.2
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.8e-31 141.4 526 30.0
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 1.8e-31 141.4 479 29.9
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.4e-31 141.0 453 31.1
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 1.7e-29 134.8 480 30.6
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 2.9e-29 134.0 474 29.5
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 2.9e-29 134.0 474 29.5
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.9e-29 133.3 530 28.3
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 1.1e-28 132.1 466 31.1
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 2.5e-28 131.0 234 40.2
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 3.2e-28 130.6 467 28.1
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 7.1e-28 129.4 465 30.3
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 1.6e-27 128.3 453 29.4
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 1.6e-27 128.3 349 33.5
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 6.0e-27 126.3 485 30.7
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 7.9e-27 125.9 488 29.3
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.3e-26 125.2 339 34.5
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 6.7e-26 122.9 481 29.5
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 8.7e-26 122.5 458 29.0
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 1.5e-25 121.7 390 29.5
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.9e-25 121.3 336 32.1
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 4.3e-25 120.2 465 27.1
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 7.4e-25 119.4 332 34.6
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.3e-24 118.6 363 32.2
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 1.3e-24 118.6 333 33.9
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 3.7e-24 117.1 333 34.8
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 6.3e-24 116.3 454 26.7
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 6.3e-24 116.3 261 35.6
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 8.2e-24 115.9 454 29.1
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 1.4e-23 115.2 477 30.0
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.4e-23 114.4 345 33.9
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 3.1e-23 114.0 480 28.3
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 4.1e-23 113.6 489 27.6
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 4.1e-23 113.6 451 27.7
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 6.9e-23 112.8 459 29.6
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.5e-22 111.7 455 26.8
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.5e-22 111.7 457 29.1
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.3e-21 108.6 465 27.7
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.9e-21 107.5 450 30.9
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 3.8e-21 107.1 465 27.5
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 5.0e-21 106.7 520 28.1
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.2e-19 102.1 448 26.8
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 3.5e-19 100.5 449 26.9
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 3.5e-19 100.5 497 27.4
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 3.5e-19 100.5 517 27.1
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.0e-18 99.0 472 26.7
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.8e-18 98.2 198 33.8
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 2.5e-17 94.4 175 38.3
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 6.3e-16 89.7 200 35.0
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 1.8e-15 88.2 340 31.2
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 4.2e-12 77.0 223 33.2
FAN18G3895 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.1e-11 74.7 291 27.5
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 3.6e-11 73.9 349 29.5
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 1.0e-10 72.4 123 41.5
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 1.0e-10 72.4 76 47.4
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 3.0e-10 70.9 468 26.5
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 3.9e-10 70.5 185 34.6
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 8.8e-10 69.3 122 41.0
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 7.4e-09 66.2 118 39.8
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 2.2e-08 64.7 337 25.5
Ciclev10023353m.g Citrus clementina HOM05D007047 ORTHO05D009177 4.8e-08 63.5 175 27.4
FAN18G3996 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.1e-07 62.4 81 44.4
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 1.1e-07 62.4 332 27.4
Os11g0249300 Oryza sativa ssp. japonica HOM05D007047 ORTHO05D009177 1.4e-07 62.0 408 24.0
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.1e-07 60.8 50 52.0
AL3G44940 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 3.4e-06 57.4 39 69.2
AL6G38430 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 3.4e-06 57.4 39 69.2
AL8G18000 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 3.4e-06 57.4 39 69.2


User provided reference genes

Program Settings