Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1401.0 688 100.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1250.3 740 85.7
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1215.3 705 87.0
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1167.9 738 80.6
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.3e-272 943.0 738 67.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 8.6e-272 940.3 738 67.2
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-223 778.5 740 58.2
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 3.1e-221 772.3 744 58.1
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.9e-219 765.8 743 57.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 3.2e-218 762.3 745 56.6
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.1e-213 747.3 743 55.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 6.0e-209 731.5 742 55.0
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.6e-206 723.4 739 53.9
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.6e-206 723.4 739 53.9
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.8e-205 719.9 743 52.0
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.2e-204 717.2 739 53.5
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.6e-204 716.1 739 53.7
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.3e-195 687.2 738 51.6
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.5e-194 682.9 753 50.9
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.1e-193 679.9 738 50.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 6.3e-190 668.3 746 49.1
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.2e-188 664.1 746 51.5
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.7e-185 652.9 745 48.2
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 3.3e-183 646.0 738 49.1
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.6e-180 636.3 741 48.7
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.1e-177 626.7 737 49.0
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 3.6e-177 625.9 742 47.8
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 6.1e-177 625.2 737 48.8
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.3e-176 623.2 746 49.1
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 8.2e-174 614.8 739 47.0
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 7.7e-172 608.2 739 47.6
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 3.8e-171 605.9 743 46.6
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.2e-170 602.4 753 47.0
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 6.1e-169 598.6 744 46.8
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.8e-168 597.0 706 48.6
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 7.0e-165 585.1 739 46.0
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.7e-164 583.2 741 46.8
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 5.9e-164 582.0 745 46.8
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.1e-162 577.8 741 45.6
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.6e-161 573.9 541 55.5
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 6.8e-160 568.5 742 46.9
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.2e-159 567.8 741 45.1
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 4.1e-157 559.3 747 44.6
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 8.6e-155 551.6 745 45.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 7.3e-154 548.5 750 44.9
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 4.0e-152 542.7 602 49.7
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.6e-151 540.0 760 43.7
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.4e-149 533.5 743 41.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 6.0e-148 528.9 644 46.7
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.0e-147 526.6 733 45.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.1e-146 524.6 689 44.6
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 5.2e-144 515.8 737 40.3
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 7.5e-143 511.9 722 43.4
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.9e-142 509.2 746 41.2
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-141 506.9 677 47.6
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 5.2e-136 489.2 748 40.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.5e-135 487.6 745 39.5
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 9.9e-135 485.0 710 43.2
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 2.2e-134 483.8 706 41.9
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.2e-132 478.0 742 40.3
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 2.7e-132 476.9 724 41.2
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.6e-132 476.1 704 41.5
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 7.8e-132 475.3 592 46.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.9e-131 473.0 703 41.3
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 5.6e-130 469.2 735 38.8
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 2.1e-129 467.2 698 41.3
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.2e-127 461.5 696 41.5
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.0e-127 460.7 706 40.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 3.8e-126 456.4 775 39.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.1e-125 454.9 737 38.3
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.4e-125 454.5 739 41.0
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.7e-124 450.3 749 38.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.3e-122 443.4 746 37.3
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 9.6e-122 441.8 746 38.5
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.1e-121 440.7 747 38.3
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 9.0e-120 435.3 768 37.2
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 5.8e-119 432.6 701 41.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 9.9e-119 431.8 701 41.5
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.2e-118 430.6 733 40.5
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 7.1e-117 425.6 736 36.8
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 4.6e-116 422.9 731 40.1
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 2.4e-112 410.6 747 37.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.0e-111 407.5 761 34.3
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 6.0e-108 396.0 761 36.4
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.9e-106 391.0 765 36.9
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.8e-105 387.1 761 37.6
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.7e-105 386.7 570 39.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.2e-103 381.7 740 35.9
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.2e-100 371.7 740 35.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.5e-98 364.8 726 35.5
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 7.4e-98 362.5 668 36.7
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.6e-97 361.3 678 37.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.3e-96 356.3 774 35.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.3e-89 335.1 654 35.0
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-85 322.0 693 35.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 3.3e-82 310.5 720 30.4
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 2.0e-79 301.2 761 31.9
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 2.0e-79 301.2 329 48.6
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 4.2e-77 293.5 532 36.7
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 7.2e-77 292.7 239 62.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 2.9e-70 270.8 752 30.6
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.7e-65 253.8 423 37.4
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.6e-63 247.7 201 60.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-62 245.4 181 68.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.7e-58 229.9 767 28.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 7.5e-58 229.6 339 40.7
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 4.8e-57 226.9 339 40.1
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 9.1e-56 222.6 744 28.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.6e-55 221.9 471 33.8
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 5.9e-55 219.9 394 36.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 6.5e-54 216.5 330 39.4
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.8e-51 208.4 737 28.0
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.7e-49 201.8 263 47.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 5.4e-48 196.8 502 30.5
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.2e-44 185.7 410 31.7
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.4e-40 171.4 767 27.8
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-38 166.0 708 27.0
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.5e-37 159.5 264 38.6
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.1e-36 156.8 411 30.2
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 4.0e-35 154.1 223 45.3
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.8e-35 153.3 133 60.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 5.8e-34 150.2 354 32.5
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.1e-32 146.0 265 37.0
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-29 135.2 430 27.7
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.8e-26 123.6 205 37.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.4e-24 118.2 637 24.6
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 6.6e-22 110.2 158 39.9
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.8e-20 104.8 441 24.5
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.8e-20 104.8 412 27.2
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.7e-17 95.5 199 36.7
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 3.7e-17 94.4 135 40.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.3e-14 85.9 294 25.9
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.3e-14 85.9 294 25.9
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 8.6e-14 83.2 489 22.5
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 8.6e-14 83.2 77 50.6
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.6e-13 80.5 277 26.7
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.3e-13 80.1 278 27.3
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 9.6e-13 79.7 447 23.5
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.8e-12 78.2 278 26.6
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 5.8e-10 70.5 74 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 7.6e-10 70.1 475 22.9
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.3e-06 58.5 222 29.7


User provided reference genes

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