Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 3.3e-99 365.2 199 100.0
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 8.7e-68 260.8 199 73.9
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 5.0e-55 218.4 208 65.9
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.4e-54 216.9 192 67.2
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 5.5e-54 214.9 206 64.6
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.2e-53 213.8 208 63.5
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.6e-53 213.4 210 63.8
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.6e-53 213.4 199 66.3
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.4e-52 210.3 204 61.8
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 3.0e-52 209.1 199 64.8
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 3.9e-52 208.8 194 64.9
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 3.3e-51 205.7 204 60.8
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 3.3e-51 205.7 200 62.5
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 7.4e-51 204.5 204 59.8
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 1.7e-50 203.4 199 62.8
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 2.2e-50 203.0 199 62.8
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.1e-49 200.7 193 63.2
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.1e-49 200.7 192 63.5
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.4e-49 200.3 199 60.3
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.4e-49 200.3 194 63.4
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.4e-49 200.3 191 61.3
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.8e-49 199.9 193 63.2
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 3.1e-49 199.1 197 60.9
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 5.3e-49 198.4 194 61.9
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.2e-48 197.2 201 59.2
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.6e-48 196.8 187 63.1
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.6e-48 196.8 189 61.9
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.0e-48 196.4 201 59.2
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 2.6e-48 196.1 202 59.9
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 5.9e-48 194.9 201 57.7
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.0e-47 194.1 198 61.6
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.9e-47 192.6 201 58.2
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.5e-47 191.0 195 59.0
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 8.5e-47 191.0 200 60.0
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.9e-46 189.9 191 59.2
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.5e-46 188.3 199 60.3
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.5e-46 188.3 199 60.3
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 5.5e-46 188.3 199 55.8
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 7.2e-46 188.0 195 59.0
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 4.7e-45 185.3 197 58.9
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 6.1e-45 184.9 199 58.3
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.0e-44 184.1 192 59.4
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.4e-44 183.7 198 58.1
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.8e-44 183.3 192 58.9
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.8e-44 183.3 189 56.6
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.3e-44 183.0 196 60.2
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 3.0e-44 182.6 186 58.6
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 4.0e-44 182.2 199 54.8
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 4.0e-44 182.2 198 56.1
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.6e-43 179.5 195 56.9
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 5.7e-43 178.3 209 55.5
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 7.5e-43 177.9 251 48.2
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 7.5e-43 177.9 200 58.0
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.5e-43 177.9 184 57.1
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 9.7e-43 177.6 199 52.8
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.3e-42 177.2 187 58.8
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.7e-42 176.8 202 53.0
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.2e-42 176.4 198 54.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 2.8e-42 176.0 198 55.6
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 2.8e-42 176.0 203 56.2
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 2.8e-42 176.0 196 55.1
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 6.3e-42 174.9 192 58.3
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.4e-41 173.7 196 54.6
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 4.1e-41 172.2 203 54.7
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 4.1e-41 172.2 192 56.2
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 7.0e-41 171.4 186 56.5
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 7.0e-41 171.4 199 53.8
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-40 170.6 196 54.1
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.2e-40 170.6 196 54.1
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.2e-40 170.6 200 55.0
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.2e-40 170.6 198 54.0
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 2.0e-40 169.9 213 52.1
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 2.0e-40 169.9 192 55.7
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.0e-40 169.9 190 55.3
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 2.7e-40 169.5 214 53.7
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 4.5e-40 168.7 193 53.9
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 4.5e-40 168.7 206 51.5
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.0e-39 167.5 195 53.3
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.0e-39 167.5 196 54.1
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.0e-39 167.5 196 54.1
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.0e-39 167.5 213 52.1
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.2e-39 166.4 198 55.1
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 2.2e-39 166.4 222 50.5
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 5.0e-39 165.2 194 52.1
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 8.5e-39 164.5 188 55.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 8.5e-39 164.5 186 54.8
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 4.2e-38 162.2 188 53.7
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 7.2e-38 161.4 204 52.5
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 3.6e-37 159.1 237 46.8
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 3.6e-37 159.1 237 46.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 4.7e-37 158.7 190 50.5
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 4.7e-37 158.7 214 51.9
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 6.1e-37 158.3 186 52.7
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 1.0e-36 157.5 198 52.5
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 5.2e-36 155.2 191 50.8
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 5.2e-36 155.2 202 50.5
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 8.8e-36 154.5 202 50.0
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 3.4e-35 152.5 201 51.2
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 4.4e-35 152.1 205 51.2
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 5.7e-35 151.8 189 51.9
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.3e-34 150.6 189 49.2
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.2e-34 149.8 189 49.7
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.2e-34 149.8 186 52.2
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 2.4e-33 146.4 191 47.6
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 7.0e-33 144.8 189 51.3
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 7.0e-33 144.8 189 51.3
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.9e-32 141.7 187 48.1
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 1.5e-30 137.1 189 48.1
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 3.2e-30 136.0 154 55.8
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.6e-29 133.7 189 45.5
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 4.7e-29 132.1 186 46.2
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.5e-27 127.1 115 60.9
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.4e-27 125.9 160 49.4
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.8e-26 122.9 153 52.9
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 6.3e-26 121.7 200 44.5
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.9e-23 112.8 133 54.1
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 8.6e-23 111.3 189 43.4
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.3e-22 109.0 182 45.6
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 7.3e-22 108.2 157 45.2
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 7.3e-22 108.2 185 38.9
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 1.5e-19 100.5 204 37.3
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 2.0e-19 100.1 137 48.9
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 3.4e-19 99.4 174 41.4
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 9.8e-19 97.8 151 46.4
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.2e-16 90.9 182 36.3
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.6e-16 90.5 67 70.1
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.0e-15 87.8 141 47.5
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 6.6e-15 85.1 178 33.7
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.1e-14 84.3 168 40.5
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 7.3e-14 81.6 194 33.0
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 1.7e-10 70.5 128 39.1
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.7e-10 69.3 126 35.7
CDE10G0174 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 3.3e-06 56.2 63 52.4


User provided reference genes

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