Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.7e-84 314.3 171 100.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.6e-63 244.6 171 78.4
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 8.1e-54 214.2 169 74.0
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-53 213.0 169 74.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 4.4e-52 208.4 169 72.8
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.9e-52 207.2 171 69.6
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.1e-50 203.8 171 66.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.1e-50 203.8 172 70.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 5.4e-50 201.4 170 70.6
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 9.2e-50 200.7 167 67.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.6e-49 199.9 171 69.6
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 3.5e-49 198.7 171 65.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.6e-49 198.4 168 69.0
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 6.0e-49 198.0 172 69.8
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 7.8e-49 197.6 172 68.0
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.0e-48 197.2 155 71.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.9e-48 195.3 169 69.2
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 8.6e-48 194.1 171 68.4
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 8.6e-48 194.1 146 71.9
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.3e-47 192.2 161 70.2
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.2e-46 190.3 168 67.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 8.1e-46 187.6 155 67.7
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.1e-45 187.2 159 67.3
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.1e-45 187.2 170 65.9
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.8e-45 186.4 159 66.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 3.1e-45 185.7 159 66.7
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 5.2e-45 184.9 159 66.7
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.8e-45 184.5 154 67.5
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.6e-44 182.6 170 66.5
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 7.6e-44 181.0 168 63.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.6e-44 181.0 155 68.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.3e-43 180.3 162 63.6
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.7e-43 179.9 155 69.7
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.9e-43 179.1 123 79.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.9e-43 179.1 159 65.4
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.9e-43 178.3 168 63.1
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 6.4e-43 177.9 142 70.4
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 6.4e-43 177.9 172 62.8
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.9e-42 176.4 167 61.7
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.9e-42 176.4 171 60.2
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.4e-42 176.0 161 62.7
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.2e-42 175.3 171 62.6
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 5.4e-42 174.9 187 57.8
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.3e-42 174.1 159 66.0
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 4.6e-41 171.8 170 62.9
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.0e-40 170.6 159 64.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.3e-40 170.2 155 65.2
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.7e-40 169.9 184 57.6
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 2.3e-40 169.5 174 60.3
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.3e-40 169.5 158 58.2
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.3e-40 169.5 158 58.2
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.0e-40 169.1 170 60.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.9e-40 168.7 159 64.2
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 3.9e-40 168.7 150 66.7
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 8.7e-40 167.5 152 63.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 2.5e-39 166.0 159 61.0
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.3e-39 165.6 167 60.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.3e-39 165.6 155 62.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 3.3e-39 165.6 156 61.5
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 7.3e-39 164.5 152 66.4
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.3e-38 163.7 157 63.1
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.6e-38 163.3 129 74.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.8e-38 162.5 155 61.9
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.8e-38 162.5 134 67.9
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.6e-38 162.2 158 58.9
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 3.6e-38 162.2 127 70.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.8e-38 161.8 169 61.5
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 8.1e-38 161.0 175 61.1
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.1e-37 160.6 162 64.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.1e-37 160.6 154 59.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.4e-37 160.2 147 63.9
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.8e-37 159.8 155 63.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.4e-37 159.5 137 66.4
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.4e-37 159.5 137 66.4
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 9.0e-37 157.5 171 58.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.5e-36 156.8 171 58.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 5.8e-36 154.8 166 59.6
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 9.9e-36 154.1 149 59.1
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.7e-35 153.3 159 60.4
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.2e-35 152.9 148 62.2
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 4.9e-35 151.8 149 59.1
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.4e-35 151.4 162 58.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.4e-34 150.2 149 59.1
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.4e-34 150.2 149 59.1
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-34 149.1 154 61.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 3.2e-34 149.1 168 54.8
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 3.5e-33 145.6 152 54.6
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 7.8e-33 144.4 209 47.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.0e-32 144.1 173 53.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.7e-32 143.3 157 58.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.9e-32 142.1 158 58.2
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 3.9e-32 142.1 170 55.3
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.6e-32 141.4 158 58.2
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 6.6e-32 141.4 153 56.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 8.7e-32 141.0 162 53.7
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 8.7e-32 141.0 158 58.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 8.7e-32 141.0 155 57.4
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-31 139.4 160 59.4
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.3e-31 139.0 162 55.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 5.6e-31 138.3 166 53.6
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.3e-31 137.9 158 57.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.3e-30 137.1 145 56.6
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.6e-30 136.7 163 55.8
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.8e-30 136.0 162 56.8
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 1.5e-28 130.2 149 55.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-27 127.1 126 62.7
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.3e-27 127.1 166 52.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-26 124.0 154 55.2
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.4e-26 123.6 144 50.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.4e-26 123.6 112 67.0
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.9e-26 123.2 159 51.6
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.2e-26 122.1 154 54.5
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 4.2e-26 122.1 152 56.6
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.2e-25 120.6 97 72.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.9e-24 115.5 148 52.7
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.5e-23 113.6 84 79.8
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.5e-23 113.6 114 58.8
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 5.6e-23 111.7 168 45.8
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 9.6e-23 110.9 196 44.9
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.8e-21 106.7 121 57.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.4e-21 106.3 96 67.7
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 6.9e-21 104.8 153 45.8
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 9.0e-21 104.4 127 51.2
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.0e-21 104.4 82 69.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 5.8e-20 101.7 116 55.2
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 2.9e-19 99.4 116 54.3
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.4e-18 97.1 85 61.2
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.7e-17 92.8 163 44.2
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.7e-17 92.8 86 68.6
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.6e-17 92.0 71 67.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 3.0e-16 89.4 99 52.5
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 5.1e-16 88.6 173 41.6
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 8.7e-16 87.8 150 44.7
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-13 80.5 80 56.2
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-13 79.7 77 61.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.0e-13 77.8 77 59.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.0e-13 77.8 77 59.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 9.0e-13 77.8 86 57.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-12 77.0 56 69.6
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 7.6e-12 74.7 146 36.3
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-11 73.2 56 69.6
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.0e-11 72.0 60 66.7
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 8.4e-11 71.2 59 72.9
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.0e-08 64.3 279 29.4
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 4.3e-07 58.9 55 52.7
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 9.7e-07 57.8 95 47.4
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 8.2e-06 54.7 45 62.2


User provided reference genes

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