Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1916.4 931 100.0
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1687.5 926 89.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1655.2 922 88.8
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 0.0e+00 1375.1 943 72.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 0.0e+00 1332.8 925 72.4
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1250.7 740 85.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1194.5 927 65.2
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1190.3 931 65.4
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 0.0e+00 1157.1 905 65.2
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 0.0e+00 1098.6 924 62.1
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.2e-305 1053.1 922 60.4
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 3.9e-304 1048.1 930 58.6
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.0e-296 1021.9 919 57.8
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 6.8e-296 1020.8 919 57.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.2e-295 1020.0 927 56.7
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.8e-294 1015.4 919 57.9
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.6e-292 1009.6 920 57.5
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.9e-290 1002.7 917 57.1
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.1e-285 986.9 917 56.4
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.6e-284 983.0 931 56.4
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 7.0e-277 957.6 926 53.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 5.9e-276 954.5 926 53.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.9e-269 932.9 929 53.1
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.9e-269 932.9 919 54.4
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 7.8e-268 927.5 900 55.4
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.5e-266 923.3 918 53.9
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 1.9e-266 922.9 933 52.8
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 8.9e-264 914.1 930 54.3
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.0e-263 912.9 919 54.3
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 6.4e-262 907.9 910 53.1
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.9e-261 906.4 928 52.4
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 6.0e-260 901.4 926 53.1
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 5.1e-259 898.3 928 51.6
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 8.4e-254 880.9 930 51.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.4e-253 879.4 720 61.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 6.8e-248 861.3 915 51.4
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 9.9e-247 857.4 915 51.3
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.4e-245 852.8 929 51.6
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.7e-243 846.7 913 51.7
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 4.0e-240 835.5 958 49.2
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.8e-238 828.9 933 49.1
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.4e-237 826.2 831 52.6
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.6e-234 814.3 925 48.5
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 6.2e-233 811.6 929 49.5
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 6.9e-232 808.1 927 51.1
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 2.4e-229 799.7 774 54.1
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 5.5e-229 798.5 921 49.3
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.0e-224 782.3 948 47.5
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.3e-219 767.3 919 48.1
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 5.9e-215 751.9 821 49.7
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 7.6e-215 751.5 890 47.5
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 5.5e-213 745.3 780 52.2
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.1e-205 721.1 887 44.1
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.2e-201 706.8 925 45.8
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.6e-196 690.6 932 42.1
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.6e-196 689.5 939 42.2
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 7.9e-196 688.3 915 41.7
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 7.9e-196 688.3 942 43.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 6.7e-195 685.3 923 42.6
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.7e-188 662.5 896 42.7
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.1e-186 657.9 940 41.4
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 4.4e-186 656.0 878 45.6
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 7.5e-186 655.2 966 41.8
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.1e-184 651.4 892 43.2
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 1.8e-184 650.6 923 41.5
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.0e-182 644.8 904 42.6
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.2e-180 637.9 927 42.5
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 8.0e-180 635.2 954 38.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.5e-178 628.6 903 41.2
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 3.7e-177 626.3 906 41.6
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.4e-176 624.4 926 39.8
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.2e-175 621.3 903 41.3
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 5.9e-175 619.0 890 42.1
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 7.2e-173 612.1 952 40.0
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.2e-172 611.3 939 39.1
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.7e-172 609.4 945 39.7
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.4e-168 597.0 922 40.1
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.6e-167 594.3 896 41.4
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 4.5e-167 592.8 902 41.4
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 7.7e-167 592.0 946 41.1
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.0e-166 591.7 903 41.5
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 3.3e-165 586.6 899 41.2
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 5.6e-165 585.9 950 39.6
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 7.3e-165 585.5 933 40.5
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.2e-162 578.2 932 39.1
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.3e-161 574.7 948 38.9
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.4e-160 571.2 813 43.4
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.6e-159 567.8 933 39.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.4e-152 543.9 974 37.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-149 535.0 912 39.9
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.0e-147 526.6 776 39.7
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.9e-144 517.7 925 37.4
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.1e-143 514.2 832 38.3
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 2.1e-143 514.2 669 44.7
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.3e-141 506.9 938 36.7
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.2e-135 488.4 578 46.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.1e-127 461.1 417 56.8
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 6.2e-124 449.5 897 33.3
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 4.3e-117 426.8 410 52.2
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 2.4e-112 411.0 533 44.1
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 4.2e-112 410.2 709 38.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.3e-101 373.6 954 32.3
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.4e-99 367.9 671 37.1
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.0e-98 364.8 975 30.8
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.1e-94 350.1 964 31.0
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 8.2e-92 342.8 483 41.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 5.5e-88 330.1 950 29.9
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 2.3e-86 324.7 523 37.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.2e-81 308.1 516 38.0
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.7e-78 296.6 643 33.6
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.6e-77 294.7 953 29.7
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.0e-73 282.7 354 42.9
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.7e-69 266.9 784 30.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 4.5e-66 257.3 368 42.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.3e-65 255.8 524 33.8
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 1.3e-65 255.8 201 62.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.7e-65 255.4 181 70.7
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.8e-60 237.3 308 46.1
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 5.9e-58 230.3 290 46.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.5e-56 224.9 449 33.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-53 216.1 402 35.3
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 7.5e-53 213.4 402 34.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.7e-52 212.2 686 27.4
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.7e-50 204.9 507 31.8
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-49 203.0 441 33.1
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.1e-48 199.5 329 37.1
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 3.2e-43 181.4 250 43.6
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 2.0e-37 162.2 213 39.4
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.4e-36 157.1 542 26.6
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-35 156.4 310 31.6
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.1e-35 156.4 310 31.6
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 2.1e-31 142.1 113 56.6
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.5e-26 124.8 387 28.4
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.0e-25 121.7 482 24.3
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.9e-25 121.3 389 27.2
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.9e-25 121.3 484 25.6
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 1.1e-22 113.2 138 44.9
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.9e-20 105.1 232 31.9
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 8.4e-20 103.6 533 24.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.2e-18 99.8 199 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 2.3e-17 95.5 427 25.3
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.5e-16 92.8 730 21.6
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.6e-16 90.9 425 23.8
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 1.8e-14 85.9 118 43.2
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 3.4e-13 81.6 149 32.9
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 3.4e-13 81.6 149 33.6
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 2.1e-10 72.4 137 32.8
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 3.0e-09 68.6 159 32.1
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.1e-09 67.8 222 32.0
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 2.5e-08 65.5 115 36.5
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 9.6e-08 63.5 127 35.4
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.8e-07 62.0 182 29.1
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 6.9e-06 57.4 57 45.6


User provided reference genes

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