Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 3.6e-92 341.7 185 100.0
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 4.8e-52 208.4 182 63.7
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 1.1e-51 207.2 191 60.2
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 7.4e-45 184.5 202 54.5
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 4.5e-42 175.3 190 59.5
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 1.1e-32 144.1 191 49.2
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 3.0e-30 136.0 197 47.7
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 7.4e-29 131.3 194 44.3
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 2.4e-27 126.3 194 42.8
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 1.0e-25 120.9 194 42.8
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 2.9e-25 119.4 192 41.7
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 4.2e-24 115.5 192 43.8
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 3.6e-23 112.5 187 42.8
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 3.0e-22 109.4 210 40.0
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 4.0e-22 109.0 183 41.5
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 4.4e-21 105.5 156 45.5
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 4.4e-21 105.5 194 38.7
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 5.7e-21 105.1 187 40.6
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.7e-20 103.6 186 43.5
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.8e-20 102.8 157 43.9
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 4.8e-20 102.1 193 41.5
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 8.2e-20 101.3 174 46.6
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 1.4e-19 100.5 178 44.9
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 5.3e-19 98.6 182 40.7
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 5.9e-18 95.1 181 39.8
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 7.7e-18 94.7 181 39.8
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 1.5e-16 90.5 187 39.0
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 5.5e-16 88.6 181 36.5
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 9.4e-16 87.8 181 39.2
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 1.2e-15 87.4 185 38.4
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 6.1e-15 85.1 163 39.9
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 8.0e-15 84.7 163 37.4
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 2.3e-14 83.2 169 36.7
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 8.8e-14 81.3 173 38.7
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.5e-13 80.5 184 35.9
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 2.0e-13 80.1 182 37.4
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 4.4e-13 79.0 175 36.0
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 5.7e-13 78.6 184 35.3
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 5.7e-13 78.6 158 38.0
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 3.7e-12 75.9 167 37.7
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 4.8e-12 75.5 138 37.7
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 4.8e-12 75.5 189 33.3
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 4.8e-12 75.5 145 37.9
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 8.3e-12 74.7 184 35.3
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 1.1e-11 74.3 151 38.4
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 1.4e-11 73.9 141 36.9
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 1.4e-11 73.9 160 36.9
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 2.4e-11 73.2 134 39.6
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 3.1e-11 72.8 138 40.6
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 3.1e-11 72.8 160 39.4
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 5.4e-11 72.0 167 36.5
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 5.4e-11 72.0 167 36.5
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 7.0e-11 71.6 53 62.3
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 7.0e-11 71.6 53 62.3
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 7.0e-11 71.6 53 62.3
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 7.0e-11 71.6 167 36.5
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 2.0e-10 70.1 53 62.3
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 2.0e-10 70.1 53 62.3
CAN.G352.52 Capsicum annuum HOM05D008121 ORTHO05D009878 2.7e-10 69.7 182 33.5
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 3.5e-10 69.3 169 36.1
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 5.9e-10 68.6 145 35.2
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 5.9e-10 68.6 159 33.3
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 7.7e-10 68.2 181 35.4
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 1.3e-09 67.4 139 36.0
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 1.3e-09 67.4 155 36.8
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 1.7e-09 67.0 65 56.9
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 2.3e-09 66.6 167 34.7
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 2.9e-09 66.2 182 28.6
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 5.0e-09 65.5 151 38.4
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 6.5e-09 65.1 174 33.9
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 6.5e-09 65.1 54 61.1
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 6.5e-09 65.1 54 61.1
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 6.5e-09 65.1 161 34.2
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 8.6e-09 64.7 163 36.2
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 8.6e-09 64.7 61 52.5
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 1.5e-08 63.9 156 35.9
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 1.5e-08 63.9 138 39.9
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 1.9e-08 63.5 155 36.1
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 3.2e-08 62.8 165 34.5
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 3.2e-08 62.8 163 36.2
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 9.5e-08 61.2 139 38.1
HanXRQChr09g0272891 Helianthus annuus HOM05D008121 ORTHO05D009878 2.3e-06 56.6 164 36.0
ECA232G1254 Erigeron canadensis HOM05D008121 ORTHO05D009878 5.2e-06 55.5 136 32.4


User provided reference genes

Program Settings