Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 1.0e-51 206.5 105 100.0
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 1.1e-45 186.4 106 88.7
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 2.0e-42 175.6 103 83.5
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 1.3e-41 172.9 106 83.0
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 8.2e-41 170.2 103 81.6
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 1.8e-40 169.1 101 84.2
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 3.1e-40 168.3 103 78.6
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 3.1e-40 168.3 105 82.9
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 5.3e-40 167.5 105 79.0
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 6.9e-40 167.2 105 81.9
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 9.1e-40 166.8 101 83.2
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 1.2e-39 166.4 103 81.6
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 1.2e-39 166.4 101 81.2
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 1.0e-38 163.3 110 77.3
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.2e-38 162.2 107 79.4
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 5.0e-38 161.0 105 80.0
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 8.5e-38 160.2 107 78.5
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.1e-37 159.8 107 78.5
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.4e-37 159.5 107 77.6
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 2.5e-37 158.7 100 79.0
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 9.4e-37 156.8 102 75.5
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 9.4e-37 156.8 100 80.0
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 9.4e-37 156.8 96 81.2
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 9.4e-37 156.8 106 77.4
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 1.2e-36 156.4 105 75.2
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 1.2e-36 156.4 105 75.2
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 2.1e-36 155.6 105 74.3
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 3.6e-36 154.8 105 74.3
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 6.1e-36 154.1 105 74.3
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 2.3e-35 152.1 102 72.5
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 5.1e-35 151.0 105 71.4
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 6.7e-35 150.6 103 70.9
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 6.7e-35 150.6 99 75.8
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 1.5e-34 149.4 103 71.8
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 2.6e-34 148.7 101 76.2
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 7.4e-34 147.1 103 76.7
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 7.4e-34 147.1 103 73.8
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 1.3e-33 146.4 101 72.3
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 2.2e-33 145.6 105 71.4
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.8e-33 145.2 105 71.4
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 4.8e-33 144.4 124 66.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 6.3e-33 144.1 105 70.5
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 6.3e-33 144.1 109 71.6
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 8.2e-33 143.7 105 70.5
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 1.1e-32 143.3 105 69.5
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 1.1e-32 143.3 105 69.5
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 1.1e-32 143.3 101 70.3
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 1.4e-32 142.9 105 68.6
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 1.8e-32 142.5 105 69.5
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-32 142.5 105 69.5
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-32 142.5 105 69.5
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 1.8e-32 142.5 105 69.5
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.8e-32 142.5 105 70.5
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 1.8e-32 142.5 103 68.9
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 4.1e-32 141.4 102 71.6
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 4.1e-32 141.4 101 69.3
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 9.1e-32 140.2 101 70.3
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 1.6e-31 139.4 100 72.0
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 2.0e-31 139.0 100 70.0
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 4.5e-31 137.9 101 68.3
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 5.9e-31 137.5 100 70.0
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 5.9e-31 137.5 105 68.6
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.0e-30 136.7 103 67.0
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.0e-30 136.7 101 68.3
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 3.8e-30 134.8 103 66.0
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 5.0e-30 134.4 102 68.6
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 5.0e-30 134.4 103 68.0
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 6.5e-30 134.0 101 66.3
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 6.5e-30 134.0 100 69.0
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 8.5e-30 133.7 100 71.0
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 1.9e-29 132.5 99 67.7
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 4.2e-29 131.3 100 69.0
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 5.5e-29 131.0 95 69.5
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 7.2e-29 130.6 105 65.7
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 9.4e-29 130.2 95 68.4
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 9.4e-29 130.2 102 66.7
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 2.1e-28 129.0 105 66.7
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 2.1e-28 129.0 104 63.5
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 8.0e-28 127.1 102 67.6
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 2.6e-26 122.1 96 65.6
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 3.3e-26 121.7 103 64.1
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 1.3e-25 119.8 81 79.0
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 2.8e-25 118.6 89 67.4
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 8.2e-25 117.1 96 61.5
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 3.1e-24 115.2 107 59.8
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 4.1e-24 114.8 67 86.6
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 5.3e-24 114.4 100 60.0
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 9.1e-24 113.6 116 54.3
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 1.2e-23 113.2 104 59.6
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 5.9e-23 110.9 81 71.6
Nn3g16640 Nelumbo nucifera HOM05D007328 ORTHO05D009246 7.7e-23 110.5 67 74.6
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 1.7e-22 109.4 81 70.4
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 3.8e-22 108.2 67 83.6
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 1.1e-21 106.7 65 84.6
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 1.9e-21 105.9 68 80.9
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 2.5e-21 105.5 68 79.4
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 6.1e-20 100.9 66 83.3
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 1.8e-19 99.4 66 77.3
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 2.8e-17 92.0 53 90.6
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 2.8e-17 92.0 70 67.1
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 8.3e-17 90.5 60 81.7
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 1.1e-16 90.1 50 94.0
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 1.8e-16 89.4 50 88.0
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 4.1e-16 88.2 52 88.5
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.7e-15 84.0 53 86.8
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 1.1e-13 80.1 53 77.4
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 8.8e-11 70.5 39 92.3
MCO11G116 Micromonas commoda HOM05D007328 ORTHO05D009246 3.7e-09 65.1 104 37.5
SMO203G0278 Selaginella moellendorffii HOM05D000001 ORTHO05D375656 5.0e-06 54.7 61 50.8


User provided reference genes

Program Settings