Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 8.6e-198 693.3 325 100.0
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.9e-176 622.5 323 86.7
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 9.3e-176 620.2 323 86.4
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 3.4e-170 601.7 323 84.5
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.4e-160 569.7 319 79.6
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 5.5e-160 567.8 320 79.7
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 5.5e-160 567.8 324 77.8
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 1.2e-159 566.6 323 78.9
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.2e-159 566.6 323 78.9
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.1e-159 565.8 323 79.3
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.3e-158 563.1 323 78.6
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.3e-158 563.1 323 78.0
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 1.1e-157 560.1 324 78.1
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 3.3e-157 558.5 318 77.7
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 5.7e-157 557.8 325 75.7
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 5.7e-157 557.8 320 78.1
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.3e-156 556.6 325 76.0
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 1.6e-156 556.2 320 78.1
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.1e-155 553.5 318 78.9
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 1.8e-155 552.7 323 77.1
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 4.1e-155 551.6 321 76.0
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 9.0e-155 550.4 325 76.0
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.5e-154 549.7 318 76.1
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 7.6e-154 547.4 320 77.8
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 1.0e-153 547.0 321 75.7
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.3e-153 546.6 317 77.0
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 6.5e-153 544.3 318 74.8
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 1.4e-152 543.1 318 75.8
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.5e-152 542.3 313 76.7
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.2e-152 542.0 319 77.7
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 5.5e-152 541.2 321 75.4
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 1.2e-151 540.0 325 72.6
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.2e-151 540.0 325 73.8
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 2.1e-151 539.3 319 76.2
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 2.7e-151 538.9 318 76.7
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 3.5e-151 538.5 322 75.2
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 6.1e-151 537.7 319 74.9
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 7.9e-151 537.3 318 74.8
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 7.9e-151 537.3 319 74.9
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 7.9e-151 537.3 316 76.6
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.9e-151 537.3 314 75.8
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.3e-150 536.6 321 74.5
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.8e-150 536.2 313 76.0
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.8e-150 536.2 318 74.8
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 3.0e-150 535.4 318 75.8
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 3.9e-150 535.0 318 74.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.9e-150 535.0 318 74.8
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 5.1e-150 534.6 314 75.5
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.1e-150 534.6 318 75.2
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 6.7e-150 534.3 319 75.2
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 8.7e-150 533.9 319 74.0
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 8.7e-150 533.9 319 74.9
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 4.3e-149 531.6 318 74.2
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 5.7e-149 531.2 309 75.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 7.4e-149 530.8 315 75.9
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.3e-148 530.0 318 73.0
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.3e-148 530.0 320 74.7
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 3.7e-148 528.5 317 74.8
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.8e-148 528.1 318 73.9
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.8e-147 526.2 320 73.8
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.8e-147 526.2 319 73.0
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.4e-147 525.8 319 73.0
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.1e-147 525.4 313 73.2
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 3.1e-147 525.4 317 74.1
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 3.1e-147 525.4 314 76.1
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 9.0e-147 523.9 313 73.5
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 9.0e-147 523.9 319 74.0
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-146 523.5 308 76.3
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.5e-146 523.1 317 73.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 1.5e-146 523.1 319 72.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.0e-146 522.7 321 72.0
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.0e-146 522.7 317 71.9
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.0e-146 522.7 318 73.0
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 2.6e-146 522.3 319 73.7
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.6e-146 522.3 319 73.4
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.4e-146 521.9 318 72.3
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 3.4e-146 521.9 317 74.1
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 5.9e-146 521.2 318 73.9
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 7.7e-146 520.8 314 75.2
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.0e-145 520.4 314 71.7
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.0e-145 520.4 317 74.8
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-145 520.0 317 74.1
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.5e-145 517.7 323 72.4
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 8.5e-145 517.3 313 74.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.1e-144 516.9 320 72.5
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 3.2e-144 515.4 307 73.6
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 4.2e-144 515.0 319 70.8
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.2e-144 514.2 318 70.1
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 2.7e-143 512.3 318 73.6
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 6.1e-143 511.1 319 70.5
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 6.1e-143 511.1 318 71.1
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.4e-142 510.0 320 73.1
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.8e-142 509.6 308 71.4
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.3e-142 509.2 305 72.8
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 3.0e-142 508.8 317 70.3
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 5.1e-142 508.1 318 72.0
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 1.5e-141 506.5 313 72.2
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.5e-141 506.5 318 71.7
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 9.7e-141 503.8 309 71.5
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.7e-140 503.1 309 71.5
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 2.2e-140 502.7 307 70.7
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.2e-140 502.7 315 69.8
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.7e-140 501.9 307 70.0
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 4.8e-140 501.5 309 71.5
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-139 500.0 318 70.1
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.4e-139 500.0 314 69.7
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 2.4e-139 499.2 309 71.2
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 4.1e-139 498.4 307 69.4
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.5e-138 496.5 320 65.6
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 3.4e-138 495.4 307 69.1
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 4.5e-138 495.0 307 69.1
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 7.7e-138 494.2 307 69.1
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 1.3e-137 493.4 307 69.1
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 8.5e-137 490.7 304 69.1
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-136 490.3 295 71.5
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.1e-135 486.1 307 67.8
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.7e-135 485.7 318 66.0
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.0e-134 483.8 309 69.9
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.0e-133 479.6 320 66.9
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.8e-132 475.7 288 73.3
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.2e-132 474.2 288 73.3
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 1.1e-131 473.8 309 68.3
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-130 470.3 307 70.0
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.8e-126 456.4 307 66.8
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.0e-126 455.3 309 63.8
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 5.2e-126 454.9 272 73.5
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.1e-125 453.8 323 62.2
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 4.4e-125 451.8 289 68.2
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.3e-124 450.3 294 69.7
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 7.0e-123 444.5 323 61.3
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 7.7e-122 441.0 318 63.2
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.9e-120 436.4 317 61.5
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.2e-117 427.2 309 63.8
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.0e-115 417.9 317 60.9
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 7.0e-115 417.9 317 60.9
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.7e-113 413.3 321 58.3
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.1e-107 394.0 218 78.4
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.4e-107 392.9 300 61.7
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 3.3e-104 382.5 305 58.0
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 6.1e-103 378.3 226 73.0
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.9e-96 356.7 307 55.4
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 4.6e-90 335.5 309 51.1
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.9e-83 313.5 274 56.6
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 3.5e-74 282.7 172 72.7
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.9e-73 279.3 306 47.1
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-65 254.2 261 49.4
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 9.9e-53 211.5 134 73.9
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.9e-51 207.2 127 66.9
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.0e-44 184.9 113 72.6
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.2e-43 179.5 316 32.3
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 4.1e-38 162.9 322 32.6
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.8e-30 137.5 352 28.1
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.1e-30 136.7 97 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 3.4e-29 133.3 245 34.3
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 9.7e-16 88.6 58 70.7
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 3.7e-15 86.7 74 59.5


User provided reference genes

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