Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 2.1e-262 908.7 515 100.0
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.0e-128 464.5 595 50.4
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 5.0e-123 445.7 594 51.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 2.5e-114 416.8 617 50.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.0e-111 407.1 577 49.7
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.5e-108 396.0 599 47.2
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.1e-106 391.3 621 47.0
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.9e-106 390.6 584 44.2
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 5.5e-106 389.0 609 48.4
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 7.2e-106 388.7 548 45.6
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.7e-105 386.0 604 48.0
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.4e-104 384.4 613 41.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 2.0e-103 380.6 528 51.1
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.6e-103 380.2 557 46.3
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.7e-102 377.5 563 45.1
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.8e-102 376.7 610 41.6
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.1e-101 374.8 610 41.6
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.1e-101 374.8 565 44.2
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.2e-100 371.3 610 42.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.6e-100 370.2 605 42.5
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.6e-100 370.2 576 45.5
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.5e-100 369.4 610 41.5
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 1.0e-99 368.2 609 42.9
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.8e-99 366.3 609 43.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 3.2e-98 363.2 579 43.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 7.2e-98 362.1 579 44.2
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.7e-97 360.1 570 45.3
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 4.7e-97 359.4 547 45.2
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.3e-96 357.1 580 46.9
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.3e-96 357.1 579 45.3
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 8.8e-96 355.1 599 44.7
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 2.6e-95 353.6 561 44.0
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 3.4e-95 353.2 596 42.6
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 9.7e-95 351.7 577 46.1
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.3e-94 351.3 580 46.7
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 8.3e-94 348.6 419 56.3
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.6e-92 344.4 385 49.4
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 3.5e-92 343.2 620 42.9
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 4.5e-92 342.8 620 42.9
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 5.9e-92 342.4 560 45.5
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.3e-91 341.3 419 53.7
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.3e-91 341.3 580 42.9
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.7e-91 340.9 566 42.2
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.2e-91 340.5 580 44.7
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 5.0e-91 339.3 578 42.4
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 9.4e-90 335.1 542 41.9
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.2e-86 323.9 583 39.6
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.0e-83 315.1 397 53.9
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.9e-82 310.8 449 47.4
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 5.5e-82 309.3 622 40.7
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.3e-80 303.9 514 39.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 1.2e-79 301.6 661 39.9
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 7.5e-79 298.9 254 65.4
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.2e-77 293.5 432 50.7
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 9.5e-74 282.0 426 45.3
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.6e-71 273.9 505 38.2
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.6e-63 247.3 264 53.0
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 1.7e-62 244.6 449 45.4
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 5.4e-61 239.6 222 59.5
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 3.6e-57 226.9 541 37.5
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.1e-56 223.8 194 61.3
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 5.2e-56 223.0 218 54.1
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 8.3e-54 215.7 505 35.0
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 4.1e-53 213.4 495 34.5
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.5e-47 194.9 410 39.3
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 3.2e-45 187.2 167 58.7
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 9.3e-45 185.7 215 49.8
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 7.8e-44 182.6 213 47.4
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 1.1e-32 145.6 366 33.3
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 5.8e-31 139.8 419 38.9
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 9.9e-31 139.0 138 50.7
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 8.4e-30 136.0 388 32.0
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 1.6e-28 131.7 136 50.7
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.0e-28 129.8 198 41.9
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.1e-27 126.7 177 39.0
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.1e-27 126.7 177 39.0
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.8e-25 120.9 168 40.5
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.4e-24 118.6 383 36.3
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.1e-24 117.5 370 35.1
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.9e-24 116.3 205 37.6
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.2e-21 107.1 191 35.1
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 6.7e-19 99.8 194 36.6
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 8.7e-19 99.4 102 59.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 6.5e-14 83.2 210 30.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-13 81.6 241 28.6
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 7.2e-13 79.7 197 33.5
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.2e-12 79.0 145 37.2
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.3e-11 75.5 188 30.3
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 3.9e-11 73.9 142 32.4
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 5.1e-11 73.6 188 29.8
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.1e-10 72.4 188 29.8
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.1e-10 72.4 282 24.1
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.9e-10 71.6 173 29.5
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 4.3e-10 70.5 176 29.0
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 4.3e-10 70.5 237 24.9
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.3e-10 70.5 218 27.1
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 4.3e-10 70.5 193 27.5
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 5.7e-10 70.1 90 44.4
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 5.7e-10 70.1 195 27.7
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 7.4e-10 69.7 195 26.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 9.7e-10 69.3 141 30.5
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.6e-09 68.6 174 29.3
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.6e-09 68.6 196 28.1
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.6e-09 68.6 195 26.7
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 2.2e-09 68.2 153 30.1
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 2.2e-09 68.2 153 30.1
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.8e-09 67.8 197 25.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.7e-09 67.4 156 28.2
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 4.8e-09 67.0 211 26.1
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 6.3e-09 66.6 178 26.4
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 6.3e-09 66.6 278 26.6
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 8.2e-09 66.2 138 33.3
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.1e-08 65.9 157 28.7
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.4e-08 65.5 215 25.1
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.4e-08 65.5 202 27.2
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.8e-08 65.1 189 25.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.8e-08 65.1 188 26.6
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.8e-08 65.1 216 26.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.8e-08 65.1 216 26.9
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 2.4e-08 64.7 139 32.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 2.4e-08 64.7 195 27.2
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 4.1e-08 63.9 285 24.2
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 4.1e-08 63.9 153 28.8
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 4.1e-08 63.9 185 22.7
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 4.1e-08 63.9 198 24.7
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 5.3e-08 63.5 250 24.8
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 9.0e-08 62.8 156 27.6
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.5e-07 62.0 200 25.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.5e-07 62.0 153 28.8
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.5e-07 62.0 222 27.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.0e-07 61.6 195 26.2
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 3.4e-07 60.8 317 23.3
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 5.9e-07 60.1 196 24.5
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 5.9e-07 60.1 198 24.7
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 5.9e-07 60.1 157 26.8
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 5.9e-07 60.1 188 26.1
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 7.7e-07 59.7 184 26.1
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 7.7e-07 59.7 232 25.9
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 7.7e-07 59.7 285 23.2
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.3e-06 58.9 188 27.1
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.7e-06 58.5 283 23.3
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 2.9e-06 57.8 242 23.1
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 5.0e-06 57.0 78 48.7
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 6.5e-06 56.6 279 22.6


User provided reference genes

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