Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 4.6e-52 207.6 104 100.0
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.8e-41 171.8 102 81.4
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.8e-41 171.8 98 84.7
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.0e-40 167.9 100 79.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 5.8e-39 164.1 97 82.5
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.6e-39 163.7 99 78.8
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-38 162.9 99 77.8
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.2e-38 162.2 102 81.4
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.4e-37 159.5 105 73.3
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.4e-37 158.7 97 78.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.2e-37 157.9 106 74.5
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 4.2e-37 157.9 96 81.2
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.5e-36 154.8 97 78.4
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.5e-36 154.8 97 78.4
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.5e-36 154.8 96 78.1
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.0e-35 153.3 99 75.8
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.3e-35 152.9 104 71.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 3.9e-35 151.4 104 73.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.9e-35 151.4 96 78.1
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 6.7e-35 150.6 98 75.5
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.1e-34 149.8 98 75.5
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.1e-34 149.8 102 75.5
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.5e-34 148.7 104 76.0
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 9.6e-34 146.7 95 75.8
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.1e-33 145.6 96 77.1
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.8e-33 144.4 103 70.9
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 8.1e-33 143.7 104 70.2
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 8.1e-33 143.7 102 69.6
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.1e-32 143.3 102 71.6
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.4e-32 142.9 98 73.5
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.4e-32 142.9 93 75.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-32 142.5 97 74.2
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.4e-32 142.1 101 71.3
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 5.3e-32 141.0 97 72.2
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 6.9e-32 140.6 96 72.9
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 9.0e-32 140.2 104 69.2
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 9.0e-32 140.2 104 67.3
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.2e-31 139.8 95 72.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 1.2e-31 139.8 95 74.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.5e-31 139.4 94 75.5
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.0e-31 139.0 104 67.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.0e-31 139.0 95 73.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.6e-31 138.7 95 71.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 3.4e-31 138.3 95 72.6
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 5.8e-31 137.5 95 66.3
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 7.6e-31 137.1 99 70.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 7.6e-31 137.1 96 74.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 7.6e-31 137.1 96 74.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.0e-30 136.7 89 69.7
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.0e-30 136.7 97 71.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.2e-30 135.6 105 68.6
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.2e-30 135.6 95 70.5
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 2.2e-30 135.6 105 70.5
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.2e-30 135.6 96 69.8
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.9e-30 135.2 95 70.5
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.8e-30 134.8 96 71.9
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 4.9e-30 134.4 96 71.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 4.9e-30 134.4 96 72.9
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 4.9e-30 134.4 104 66.3
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 6.5e-30 134.0 99 68.7
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 6.5e-30 134.0 100 66.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 6.5e-30 134.0 96 71.9
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 8.4e-30 133.7 104 65.4
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 8.4e-30 133.7 95 71.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.1e-29 133.3 95 71.6
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.1e-29 133.3 94 71.3
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 2.5e-29 132.1 103 66.0
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 4.2e-29 131.3 94 67.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 5.5e-29 131.0 104 64.4
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 5.5e-29 131.0 80 78.8
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 9.3e-29 130.2 94 71.3
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 9.3e-29 130.2 98 68.4
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.2e-28 129.8 92 71.7
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.2e-28 129.8 99 65.7
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.6e-28 129.4 105 65.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 2.1e-28 129.0 98 68.4
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.7e-28 128.6 102 62.7
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 2.7e-28 128.6 94 66.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 3.5e-28 128.3 96 71.9
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 4.6e-28 127.9 96 70.8
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 4.6e-28 127.9 96 68.8
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 4.6e-28 127.9 99 62.6
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 6.0e-28 127.5 105 65.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 7.9e-28 127.1 95 67.4
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.8e-27 125.9 78 80.8
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.1e-26 123.2 98 66.3
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-26 123.2 98 66.3
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-26 123.2 98 66.3
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.5e-26 122.1 98 65.3
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.5e-26 122.1 79 73.4
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 7.4e-26 120.6 102 60.8
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 7.4e-26 120.6 96 64.6
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 9.6e-26 120.2 102 61.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 9.6e-26 120.2 91 63.7
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.8e-25 118.6 136 52.2
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.8e-25 117.9 93 64.5
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.8e-24 115.9 98 63.3
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-24 115.5 77 74.0
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-24 115.5 77 74.0
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 3.1e-24 115.2 91 61.5
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 3.1e-24 115.2 91 61.5
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 3.1e-24 115.2 91 61.5
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.6e-23 112.1 94 62.8
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 3.4e-23 111.7 65 76.9
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 5.8e-23 110.9 100 57.0
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.0e-22 110.2 99 58.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.3e-22 109.8 93 58.1
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.7e-22 109.4 92 64.1
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 2.2e-22 109.0 93 60.2
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.9e-22 108.6 93 59.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 5.0e-22 107.8 93 58.1
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 5.0e-22 107.8 93 58.1
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 6.5e-22 107.5 93 58.1
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 6.5e-22 107.5 93 58.1
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.9e-21 105.9 104 56.7
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 3.2e-21 105.1 104 56.7
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 5.5e-21 104.4 88 56.8
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.2e-20 103.2 77 67.5
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 4.6e-20 101.3 88 60.2
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 6.1e-20 100.9 76 67.1
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.0e-19 100.1 76 68.4
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.3e-19 99.0 89 56.2
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.1e-18 96.7 82 58.5
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.5e-18 95.5 85 55.3
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 2.5e-18 95.5 76 63.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 3.3e-18 95.1 97 54.6
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.3e-18 94.7 90 53.3
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 8.2e-17 90.5 96 49.0
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 9.0e-16 87.0 87 55.2
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.3e-14 83.2 91 50.5
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.2e-14 82.4 87 54.0
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 6.5e-14 80.9 66 63.6
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-13 80.1 91 49.5
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 9.4e-13 77.0 55 67.3
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.6e-12 76.3 51 66.7
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.6e-12 76.3 89 48.3
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 3.9e-11 71.6 73 52.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 5.1e-11 71.2 64 56.2
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 6.7e-11 70.9 54 64.8
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.1e-10 70.1 57 59.6
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.0e-10 69.3 61 55.7
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 2.5e-10 68.9 58 56.9
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 9.7e-10 67.0 58 56.9
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.7e-09 65.1 34 88.2
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.4e-08 63.2 37 78.4
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.8e-08 62.8 36 83.3
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.4e-08 62.4 34 85.3
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 1.2e-07 60.1 42 66.7
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 1.2e-07 60.1 34 85.3
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 3.4e-07 58.5 71 45.1
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 3.4e-07 58.5 46 63.0


User provided reference genes

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