Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.3e-47 190.7 95 100.0
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.9e-36 155.6 94 80.9
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.0e-34 149.8 95 76.8
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 7.7e-30 133.7 95 66.3
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.3e-29 132.9 95 66.3
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.7e-27 125.2 96 64.6
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.6e-27 124.8 95 62.1
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 4.7e-27 124.4 93 63.4
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 8.0e-27 123.6 95 61.1
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 1.2e-25 119.8 96 61.5
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.0e-25 119.0 95 62.1
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.0e-25 119.0 94 60.6
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.3e-25 118.2 95 61.1
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 4.4e-25 117.9 95 58.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 5.7e-25 117.5 95 60.0
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 7.5e-25 117.1 87 64.4
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.7e-24 114.8 96 60.4
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 8.2e-24 113.6 95 60.0
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.4e-23 112.8 88 61.4
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 2.4e-23 112.1 96 56.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-23 111.7 89 64.0
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 4.1e-23 111.3 96 59.4
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.9e-21 105.1 89 55.1
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 8.5e-21 103.6 90 55.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-20 102.8 90 54.4
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 2.5e-20 102.1 98 60.2
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 3.2e-20 101.7 96 51.0
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 9.4e-20 100.1 96 52.1
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 9.4e-20 100.1 95 53.7
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 9.4e-20 100.1 96 54.2
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.2e-19 99.8 96 54.2
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-19 99.8 94 52.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.2e-19 99.8 85 61.2
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.1e-19 99.0 102 52.9
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.0e-18 96.7 89 55.1
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 1.8e-18 95.9 93 53.8
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.2e-17 93.2 87 54.0
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 4.4e-17 91.3 81 58.0
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.7e-16 89.4 95 47.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.8e-16 88.6 92 52.2
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 3.7e-16 88.2 106 43.4
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 8.3e-16 87.0 92 50.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 8.3e-16 87.0 96 46.9
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.2e-14 83.2 94 48.9
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 1.6e-14 82.8 85 49.4
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 1.3e-13 79.7 71 57.7
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 2.9e-13 78.6 78 55.1
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 3.8e-13 78.2 90 46.7
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.5e-13 77.4 90 48.9
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 6.5e-13 77.4 94 47.9
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 8.6e-13 77.0 93 47.3
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.9e-12 75.9 88 48.9
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.5e-12 75.5 86 51.2
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 4.2e-12 74.7 94 45.7
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 9.5e-12 73.6 95 43.2
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.6e-11 72.8 91 45.1
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.1e-11 72.4 87 47.1
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 2.1e-11 72.4 94 44.7
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 2.8e-11 72.0 93 44.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.6e-11 71.6 85 45.9
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 87 47.1
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 87 47.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.0e-10 68.6 90 38.9
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 3.0e-10 68.6 98 43.9
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 4.0e-10 68.2 100 40.0
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.0e-10 68.2 91 40.7
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.0e-10 68.2 94 41.5
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.8e-10 67.4 84 50.0
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.8e-10 67.4 89 44.9
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 6.8e-10 67.4 89 44.9
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 6.8e-10 67.4 93 40.9
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 8.8e-10 67.0 97 41.2
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.2e-09 66.6 95 42.1
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 1.2e-09 66.6 83 44.6
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 41.7
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-09 66.2 91 38.5
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.0e-09 65.9 91 40.7
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 2.0e-09 65.9 94 41.5
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 89 43.8
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 4.4e-09 64.7 90 43.3
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 5.7e-09 64.3 97 41.2
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.7e-09 64.3 94 41.5
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 1.7e-08 62.8 92 43.5
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.7e-08 62.8 97 40.2
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.7e-08 62.8 96 38.5
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 87 40.2
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.8e-07 59.3 89 40.4
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.4e-07 58.9 87 39.1
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 2.4e-07 58.9 99 38.4
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 3.1e-07 58.5 94 35.1
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.1e-07 58.2 97 40.2
A08p30150 Brassica napus HOM05D011140 ORTHO05D013248 5.4e-07 57.8 96 37.5
BraA08t34949Z Brassica rapa HOM05D011140 ORTHO05D013248 5.4e-07 57.8 96 37.5
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 5.4e-07 57.8 85 41.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 7.0e-07 57.4 93 33.3
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 9.2e-07 57.0 86 39.5
BcaB03g12952 Brassica carinata HOM05D011140 ORTHO05D013248 1.2e-06 56.6 98 36.7
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 87 37.9
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.6e-06 56.2 96 36.5
BcaB03g14477 Brassica carinata HOM05D011140 ORTHO05D013248 3.5e-06 55.1 101 33.7
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 86 38.4
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.5e-06 55.1 95 36.8
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 3.5e-06 55.1 78 41.0
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 5.9e-06 54.3 97 39.2
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 5.9e-06 54.3 97 39.2
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 5.9e-06 54.3 97 39.2
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 5.9e-06 54.3 76 42.1


User provided reference genes

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