Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.8e-48 194.5 97 100.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.6e-46 187.6 95 98.9
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.0e-29 131.7 73 95.9
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.3e-21 105.5 73 76.7
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 7.4e-20 100.5 74 75.7
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.6e-19 99.4 73 69.9
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 6.2e-19 97.4 73 71.2
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.4e-18 96.3 73 74.0
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.4e-18 95.5 73 65.8
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 3.1e-18 95.1 73 69.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 4.0e-18 94.7 73 68.5
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.3e-18 94.4 74 73.0
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.3e-18 94.4 74 73.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 6.9e-18 94.0 73 71.2
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 9.0e-18 93.6 73 67.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-17 93.2 73 68.5
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.5e-17 92.8 73 67.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.0e-17 92.4 73 67.1
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 3.4e-17 91.7 71 71.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.4e-17 91.7 71 71.8
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.4e-17 91.7 72 72.2
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 3.4e-17 91.7 71 71.8
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 7.6e-17 90.5 75 68.0
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.3e-16 89.7 73 67.1
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.2e-16 89.0 74 67.6
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.9e-16 88.6 71 67.6
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 3.8e-16 88.2 74 67.6
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.9e-16 87.8 73 65.8
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 4.9e-16 87.8 74 67.6
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.5e-16 87.4 73 68.5
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 6.5e-16 87.4 73 64.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 6.5e-16 87.4 74 68.9
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.5e-16 87.4 78 64.1
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 6.5e-16 87.4 74 64.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 8.4e-16 87.0 73 64.4
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 8.4e-16 87.0 81 61.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.1e-15 86.7 73 65.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.1e-15 86.7 74 70.3
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.1e-15 86.7 73 67.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-15 86.7 74 66.2
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.4e-15 86.3 73 64.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.4e-15 86.3 72 66.7
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.4e-15 86.3 72 66.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.4e-15 86.3 74 66.2
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.9e-15 85.9 73 63.0
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 3.2e-15 85.1 73 67.1
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.2e-15 85.1 73 67.1
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 3.2e-15 85.1 75 66.7
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.2e-15 84.7 73 64.4
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 4.2e-15 84.7 71 62.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 5.5e-15 84.3 71 64.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.5e-15 84.3 74 64.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.1e-15 84.0 74 66.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 9.3e-15 83.6 74 63.5
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.3e-15 83.6 73 63.0
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 9.3e-15 83.6 73 63.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 9.3e-15 83.6 78 67.9
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 9.3e-15 83.6 68 63.2
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.2e-14 83.2 74 70.3
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.6e-14 82.8 71 67.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.6e-14 82.8 74 63.5
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.1e-14 82.4 78 65.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.7e-14 82.0 73 65.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.7e-14 82.0 73 67.1
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.5e-14 81.6 73 65.8
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 7.9e-14 80.5 80 65.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.0e-13 80.1 77 64.9
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-13 80.1 73 67.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.3e-13 79.7 73 63.0
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.3e-13 79.7 73 64.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.8e-13 79.3 77 62.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.8e-13 79.3 75 64.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-13 79.3 73 67.1
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.8e-13 79.3 73 65.8
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.8e-13 79.3 73 65.8
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.8e-13 79.3 73 65.8
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.3e-13 79.0 73 64.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.3e-13 79.0 75 61.3
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 3.0e-13 78.6 73 67.1
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.0e-13 78.6 71 60.6
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 3.9e-13 78.2 73 64.4
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.9e-13 78.2 74 62.2
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.9e-13 78.2 74 62.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 8.7e-13 77.0 75 62.7
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 8.7e-13 77.0 81 65.4
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-12 76.3 72 59.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.5e-12 75.5 80 62.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 4.3e-12 74.7 75 60.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.7e-12 74.3 71 59.2
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 7.4e-12 73.9 80 62.5
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 7.4e-12 73.9 75 60.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 7.4e-12 73.9 78 59.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.2e-11 72.4 80 60.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.2e-11 72.4 71 60.6
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.2e-11 72.4 78 57.7
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.8e-11 72.0 74 56.8
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.8e-11 72.0 78 59.0
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 3.7e-11 71.6 77 58.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 3.7e-11 71.6 77 58.4
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.7e-11 71.6 77 55.8
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.8e-11 71.2 73 60.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.8e-11 71.2 77 57.1
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 6.3e-11 70.9 77 61.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 8.2e-11 70.5 77 57.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 8.2e-11 70.5 74 59.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.2e-11 70.5 73 57.5
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.8e-10 69.3 81 53.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.8e-10 69.3 71 60.6
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.8e-10 69.3 73 56.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.1e-10 68.6 77 57.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 3.1e-10 68.6 76 55.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.1e-10 68.2 77 54.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 6.9e-10 67.4 77 55.8
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.5e-09 66.2 79 59.5
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.0e-09 65.9 76 55.3
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.0e-09 65.9 73 58.9
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.6e-09 63.9 71 60.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.3e-08 63.2 73 56.2
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.7e-08 62.8 78 57.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 3.8e-08 61.6 73 53.4
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.8e-08 61.6 76 52.6
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 6.5e-08 60.8 72 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.4e-07 59.7 75 52.0
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.4e-07 59.7 71 54.9
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 4.2e-07 58.2 71 52.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.1e-06 55.8 73 50.7
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.6e-06 55.1 72 52.8
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 4.6e-06 54.7 71 54.9


User provided reference genes

Program Settings