Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.5e-222 773.5 420 100.0
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.9e-144 516.5 345 82.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.9e-102 375.9 361 66.8
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 7.4e-101 371.7 359 66.6
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.0e-93 347.1 363 64.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.1e-75 288.1 364 56.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.5e-74 283.1 356 57.3
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.8e-73 279.6 357 55.7
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.8e-70 270.8 357 56.3
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-69 267.7 299 57.9
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.5e-69 265.4 355 56.1
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.8e-66 255.4 346 56.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.9e-65 253.4 336 56.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 5.0e-65 252.7 374 49.7
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-64 250.8 369 48.8
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.9e-64 250.8 350 52.0
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.9e-64 250.8 369 50.1
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 9.5e-64 248.4 394 49.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 9.5e-64 248.4 376 53.7
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.8e-62 244.2 407 48.9
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 6.8e-62 242.3 359 52.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 6.8e-62 242.3 359 52.4
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.2e-61 241.5 362 51.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.4e-61 239.6 355 51.8
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 2.9e-60 236.9 360 50.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 4.1e-59 233.0 388 46.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 4.1e-59 233.0 419 46.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.5e-58 229.9 405 43.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 6.0e-58 229.2 359 50.7
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 4.3e-56 223.0 391 46.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.6e-56 222.6 333 52.6
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.6e-56 222.6 352 52.0
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.1e-54 218.4 383 50.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-54 218.0 422 44.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 3.1e-54 216.9 312 48.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 6.8e-54 215.7 368 48.9
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.7e-52 211.1 334 50.3
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.9e-52 210.3 352 44.3
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.9e-52 210.3 340 47.1
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.1e-51 208.4 332 45.8
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.4e-51 208.0 318 48.1
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.4e-51 207.2 384 45.8
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.4e-51 207.2 384 45.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 5.4e-51 206.1 340 50.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.1e-50 204.1 364 46.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 4.6e-50 203.0 307 47.2
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.3e-49 200.7 277 54.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.6e-49 198.7 345 46.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.9e-48 197.6 364 44.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.9e-48 197.6 364 44.2
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.9e-48 197.6 294 45.9
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.3e-48 196.4 399 40.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.1e-47 194.1 290 46.2
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.8e-47 193.7 304 46.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.7e-47 193.0 235 52.8
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.7e-47 193.0 386 43.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.8e-46 191.0 235 53.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.3e-46 190.7 348 45.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.5e-45 188.0 435 40.9
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.0e-45 187.6 233 51.5
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.4e-45 186.8 338 48.8
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.4e-45 186.8 355 46.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-45 186.4 305 46.6
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 9.9e-45 185.3 319 44.5
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.7e-44 183.3 425 41.6
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 6.4e-44 182.6 363 43.3
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.4e-43 180.6 371 41.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.2e-43 180.3 362 40.9
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 5.4e-43 179.5 471 38.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.2e-42 178.3 446 40.6
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-42 178.3 471 38.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-42 177.9 309 44.0
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-42 177.6 354 44.1
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.7e-42 177.2 303 45.2
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 3.5e-42 176.8 285 46.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.0e-42 176.0 287 49.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 7.8e-42 175.6 375 44.5
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.3e-41 174.9 301 43.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.3e-41 174.9 330 43.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.7e-41 174.5 204 53.9
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.3e-41 174.1 327 46.2
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.9e-40 171.0 361 42.7
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.8e-39 167.2 347 44.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.7e-39 166.4 266 49.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 6.2e-39 166.0 298 47.7
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 8.1e-39 165.6 277 49.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 8.1e-39 165.6 352 44.3
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.4e-38 164.1 356 43.0
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.0e-37 161.0 354 43.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 7.6e-37 159.1 354 42.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.7e-36 157.9 355 39.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.2e-36 157.5 240 51.7
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.8e-36 156.8 397 36.5
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.4e-36 156.0 238 48.7
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-35 155.2 380 37.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.1e-35 155.2 363 38.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.4e-35 154.8 192 51.6
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.4e-35 154.1 395 35.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.2e-35 153.3 230 49.1
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.2e-35 153.3 346 39.6
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 4.2e-35 153.3 350 37.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 7.8e-34 149.1 485 31.5
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.0e-33 148.7 232 50.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-33 147.9 256 43.8
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.3e-33 147.5 353 37.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.3e-33 147.5 353 36.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.1e-32 145.2 207 45.9
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 7.3e-32 142.5 342 35.4
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.3e-32 142.5 203 49.3
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.6e-31 140.2 198 47.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.7e-31 139.8 207 45.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 4.7e-31 139.8 324 38.6
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 6.2e-31 139.4 191 49.7
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 8.1e-31 139.0 350 36.3
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.8e-30 137.9 323 37.2
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.4e-30 137.5 231 42.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.4e-30 137.5 206 45.1
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.4e-30 137.5 231 42.9
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.4e-30 137.5 319 38.2
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 4.0e-30 136.7 190 47.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 4.0e-30 136.7 291 40.2
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 6.9e-30 136.0 221 43.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 6.9e-30 136.0 302 37.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.9e-30 136.0 263 41.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 4.4e-29 133.3 264 38.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.4e-28 129.0 318 35.8
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-26 124.8 345 35.4
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.1e-26 124.4 382 36.6
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.0e-25 122.1 192 50.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.3e-25 120.9 331 36.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.5e-24 117.5 352 32.4
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.3e-23 115.2 191 42.4
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.1e-23 114.4 199 40.7
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.4e-22 111.7 328 34.1
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.0e-22 110.2 140 52.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.5e-21 108.2 197 39.1
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 5.8e-21 106.3 327 36.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-20 104.4 175 42.9
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.9e-20 103.2 274 37.2
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.4e-20 102.8 183 53.0
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.4e-19 101.7 259 39.0
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.9e-19 101.3 253 34.8
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.9e-19 101.3 254 37.4
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.4e-19 99.8 219 36.5
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 5.4e-19 99.8 190 41.1
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-18 98.6 297 31.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.1e-18 97.8 290 32.4
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 4.6e-18 96.7 205 40.5
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.0e-18 96.3 151 47.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.0e-17 95.5 295 32.2
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.8e-17 94.7 289 32.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.3e-17 94.4 262 33.6
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.0e-17 94.0 111 54.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.1e-16 92.0 287 32.1
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.5e-16 90.9 337 31.2
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.3e-16 90.1 208 38.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.2e-15 86.3 273 31.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 6.2e-15 86.3 107 49.5
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.4e-14 84.3 233 36.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.1e-14 84.0 307 29.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-13 82.0 159 41.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 2.2e-12 77.8 104 49.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 6.4e-12 76.3 140 44.3
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.4e-11 75.1 144 42.4
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.3e-11 72.4 140 38.6
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.6e-10 71.6 144 41.7
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.7e-10 70.9 143 34.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.7e-10 70.9 90 52.2
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-09 68.9 117 42.7
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-09 68.6 90 47.8
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.0e-09 67.4 142 38.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.7e-09 66.2 90 46.7
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.5e-08 65.1 259 32.8
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.5e-08 65.1 150 34.0
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 7.4e-08 62.8 218 31.2


User provided reference genes

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