Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 3.7e-91 338.2 169 100.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.4e-66 255.8 163 77.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 6.5e-64 247.7 163 75.5
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 7.4e-60 234.2 204 62.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 8.2e-59 230.7 171 69.6
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 3.1e-58 228.8 164 71.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 4.5e-57 224.9 164 70.1
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.3e-56 223.4 164 67.7
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.9e-55 219.5 164 64.0
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.5e-55 219.2 163 65.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.5e-55 219.2 163 68.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 3.2e-55 218.8 167 65.9
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.5e-55 218.0 168 68.5
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 7.2e-55 217.6 170 65.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.2e-54 216.9 165 65.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.6e-54 216.5 163 66.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.7e-54 214.9 163 66.9
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.0e-53 213.8 163 66.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.4e-53 213.4 164 65.9
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.2e-53 211.5 166 67.5
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 8.8e-53 210.7 164 66.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.2e-52 210.3 166 63.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-52 209.5 165 63.6
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.6e-52 209.1 177 61.6
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.6e-52 209.1 163 63.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.6e-52 209.1 165 66.7
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.6e-52 209.1 163 65.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 3.3e-52 208.8 163 65.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.4e-52 208.4 207 57.5
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.7e-52 208.0 169 63.3
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 7.5e-52 207.6 167 64.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 9.7e-52 207.2 163 64.4
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.3e-51 206.8 163 63.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-51 206.1 163 63.2
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.2e-51 206.1 167 62.9
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.8e-51 205.7 163 64.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.8e-51 205.7 166 62.7
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.8e-51 205.7 170 61.8
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.7e-51 205.3 169 62.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 8.3e-51 204.1 164 64.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-50 203.4 163 62.0
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.4e-50 202.6 163 63.2
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.4e-50 202.6 167 62.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.4e-50 202.6 167 62.3
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.1e-50 202.2 167 63.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.1e-50 202.2 169 60.9
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 4.1e-50 201.8 163 62.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.1e-50 201.8 167 62.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-49 200.3 167 62.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.0e-49 199.5 163 58.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.5e-49 198.4 163 60.7
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 4.5e-49 198.4 174 59.2
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.9e-49 198.0 164 61.0
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.7e-49 197.6 167 63.5
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.3e-48 196.8 172 58.7
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.7e-48 196.4 161 59.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.7e-48 196.4 164 62.2
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.9e-48 195.7 155 63.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.5e-48 194.5 166 61.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 6.5e-48 194.5 171 61.4
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 8.5e-48 194.1 167 58.1
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 8.5e-48 194.1 174 58.6
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.5e-47 192.6 124 71.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.2e-47 192.2 181 54.7
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-47 191.8 167 58.7
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.2e-47 191.8 159 61.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 5.5e-47 191.4 145 65.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 5.5e-47 191.4 164 57.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.5e-47 191.4 166 57.8
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 5.5e-47 191.4 164 61.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 5.5e-47 191.4 163 64.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 7.2e-47 191.0 176 61.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-46 190.3 167 58.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.2e-46 190.3 164 62.2
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.6e-46 189.9 164 59.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.6e-46 189.9 171 58.5
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.1e-46 189.5 167 59.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.7e-46 189.1 173 59.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.6e-46 188.7 147 63.9
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.7e-46 188.3 167 59.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.0e-46 187.6 159 61.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 8.0e-46 187.6 164 58.5
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 8.0e-46 187.6 229 46.3
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.4e-45 186.8 113 74.3
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.4e-45 186.8 167 57.5
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.8e-45 186.4 170 58.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.8e-45 186.4 180 53.9
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.8e-45 186.4 158 61.4
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.3e-45 186.0 163 58.3
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.0e-45 185.7 131 68.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 4.0e-45 185.3 175 54.9
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.2e-45 184.9 163 58.9
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-44 183.7 163 57.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-44 183.3 163 57.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.5e-44 183.3 164 59.1
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.0e-44 183.0 170 57.1
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.6e-44 182.6 163 57.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 9.8e-44 180.6 163 57.7
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.7e-43 179.9 163 55.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.7e-43 179.9 126 68.3
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.8e-43 179.1 185 53.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 3.7e-43 178.7 165 57.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 3.7e-43 178.7 168 56.5
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.7e-43 178.7 164 59.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.8e-43 178.3 113 73.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.8e-43 178.3 163 57.1
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.4e-42 176.0 173 54.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.4e-42 176.0 137 62.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.4e-42 176.0 119 64.7
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.1e-42 175.6 129 64.3
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 5.4e-42 174.9 170 55.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 9.1e-42 174.1 172 55.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 9.1e-42 174.1 166 55.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 9.1e-42 174.1 252 41.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.1e-42 174.1 120 70.8
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.1e-42 174.1 142 60.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-41 173.7 137 60.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.5e-41 172.2 95 77.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-40 169.9 167 54.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 9.5e-39 164.1 160 53.1
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 5.2e-37 158.3 98 71.4
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-34 150.6 99 67.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.0e-34 147.9 106 68.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.2e-33 147.1 103 62.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.6e-33 146.7 109 64.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.9e-31 139.8 118 54.2
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 4.4e-28 128.6 112 47.3
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 9.8e-28 127.5 125 55.2
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 6.4e-27 124.8 108 61.1
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.3e-27 124.4 68 79.4
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.4e-26 122.9 131 58.8
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.3e-23 111.3 66 80.3
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.2e-22 110.5 118 47.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.8e-22 109.4 68 67.6
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-19 100.5 112 54.5
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-19 99.8 60 73.3
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.9e-19 98.6 53 75.5
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.1e-17 93.2 53 71.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.7e-16 90.1 105 41.0
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 6.6e-16 88.2 47 76.6
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.6e-14 83.6 97 39.2
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.7e-14 82.0 95 50.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 2.3e-08 63.2 35 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 8.6e-08 61.2 81 44.4


User provided reference genes

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