Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.2e-85 317.0 179 100.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.2e-62 242.7 178 79.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.5e-61 239.2 178 79.8
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.1e-61 237.7 178 79.8
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.3e-50 202.2 178 73.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 5.0e-38 161.8 159 64.2
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.9e-37 159.8 178 59.0
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 3.9e-35 152.1 178 58.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.2e-31 140.6 124 71.0
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.5e-31 138.7 180 56.7
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 5.9e-31 138.3 179 57.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 5.9e-31 138.3 106 81.1
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.1e-29 134.0 165 60.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.5e-29 133.7 165 58.2
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-29 132.9 134 64.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 3.2e-29 132.5 107 81.3
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.2e-29 132.5 99 85.9
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.2e-29 132.1 123 67.5
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.5e-29 131.7 176 55.7
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 5.5e-29 131.7 178 56.7
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.2e-28 130.6 130 66.9
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.1e-28 129.8 123 66.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.7e-28 129.4 98 84.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 3.6e-28 129.0 178 54.5
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 4.7e-28 128.6 101 84.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 4.7e-28 128.6 98 83.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.1e-28 128.3 134 62.7
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.0e-28 127.9 184 54.9
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.8e-27 126.7 145 62.8
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.8e-27 126.7 145 62.8
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.8e-27 126.7 179 53.6
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.8e-27 126.7 134 62.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.8e-27 126.7 180 57.2
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.8e-27 126.7 114 71.1
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 3.0e-27 125.9 130 67.7
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.9e-27 125.6 165 57.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 6.7e-27 124.8 118 74.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 8.8e-27 124.4 121 69.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 8.8e-27 124.4 181 54.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 2.0e-26 123.2 125 68.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 3.3e-26 122.5 135 63.7
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.3e-25 120.6 151 60.9
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.2e-25 119.8 118 69.5
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.8e-25 119.4 157 56.1
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.8e-25 119.4 180 45.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.7e-25 119.0 151 60.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.7e-25 119.0 114 73.7
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 4.8e-25 118.6 164 52.4
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.3e-25 118.2 105 75.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.3e-25 118.2 179 53.6
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 6.3e-25 118.2 179 53.6
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.1e-24 117.5 165 58.2
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.1e-24 117.5 183 52.5
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.8e-24 116.7 120 69.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 7.0e-24 114.8 178 55.1
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 9.1e-24 114.4 102 78.4
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 4.5e-23 112.1 94 79.8
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 7.7e-23 111.3 113 70.8
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.0e-22 110.9 142 59.9
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.0e-22 110.9 102 78.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.3e-22 110.5 167 50.9
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.3e-22 110.5 120 68.3
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.3e-22 110.5 109 67.0
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.9e-22 109.4 120 70.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.9e-22 109.4 179 48.6
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 5.0e-22 108.6 102 77.5
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 6.5e-22 108.2 148 56.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.5e-22 108.2 142 59.9
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-21 107.5 110 68.2
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.5e-21 106.3 179 50.3
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.5e-21 106.3 98 76.5
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 3.2e-21 105.9 94 78.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.2e-21 105.9 212 44.3
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.5e-21 105.1 144 59.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 7.2e-21 104.8 103 73.8
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.4e-21 104.4 144 60.4
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.6e-20 103.6 180 50.0
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.1e-20 103.2 146 56.2
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.7e-20 102.8 181 49.2
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.7e-20 102.8 110 67.3
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.7e-20 102.8 99 74.7
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.6e-20 102.4 104 58.7
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.1e-20 101.7 117 64.1
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 8.0e-20 101.3 103 73.8
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 8.0e-20 101.3 96 76.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 8.0e-20 101.3 92 80.4
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 8.0e-20 101.3 92 80.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-19 100.5 181 48.1
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.4e-19 100.5 123 68.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.3e-19 99.8 108 70.4
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.3e-19 99.8 110 63.6
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 4.0e-19 99.0 96 77.1
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 4.0e-19 99.0 97 75.3
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.2e-19 98.6 105 73.3
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 6.8e-19 98.2 179 45.3
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 3.4e-18 95.9 101 70.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.4e-18 95.9 104 70.2
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 4.4e-18 95.5 179 43.0
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.5e-18 94.7 151 53.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 7.5e-18 94.7 128 58.6
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.3e-17 94.0 96 75.0
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-17 93.2 98 73.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.2e-17 93.2 98 73.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 2.2e-17 93.2 177 42.4
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.8e-17 92.8 86 72.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-17 92.4 98 73.5
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 3.7e-17 92.4 59 79.7
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.8e-17 92.0 130 58.5
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 6.3e-17 91.7 99 69.7
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-16 90.9 98 72.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-16 90.9 97 73.2
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.8e-16 90.1 179 45.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.1e-16 87.8 144 50.7
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-15 87.0 198 43.4
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 5.9e-15 85.1 96 60.4
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 5.9e-15 85.1 96 60.4
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.9e-15 85.1 93 64.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.0e-14 84.3 95 60.0
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-14 84.0 96 59.4
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.3e-14 84.0 113 57.5
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.7e-14 83.6 97 63.9
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.2e-14 83.2 86 72.1
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 3.8e-14 82.4 96 56.2
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 6.5e-14 81.6 87 62.1
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 6.5e-14 81.6 87 62.1
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 6.5e-14 81.6 93 62.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-13 80.9 113 54.0
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 2.5e-13 79.7 105 55.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.5e-13 79.7 103 58.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.2e-13 79.3 105 54.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.2e-13 79.3 108 57.4
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.2e-13 79.0 86 69.8
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.4e-13 77.8 95 63.2
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 2.1e-12 76.6 137 51.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-12 75.9 127 49.6
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.0e-11 74.3 92 62.0
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.4e-11 73.9 103 58.3
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 1.8e-11 73.6 175 41.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 8.8e-11 71.2 66 74.2
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.2e-10 70.9 70 70.0
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 2.6e-10 69.7 152 45.4
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 4.9e-09 65.5 66 71.2
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 4.9e-09 65.5 130 43.1
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 6.3e-09 65.1 151 47.0
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-08 64.3 85 51.8
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 1.4e-08 63.9 66 53.0
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.8e-08 63.5 66 68.2
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.4e-08 63.2 66 62.1
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 3.1e-08 62.8 122 41.0
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 5.4e-08 62.0 86 45.3
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 9.1e-08 61.2 123 42.3
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 9.1e-08 61.2 123 42.3
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 1.6e-07 60.5 139 42.4
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 1.6e-07 60.5 110 54.5
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.6e-07 60.5 114 47.4
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.0e-07 60.1 169 37.9
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 2.7e-07 59.7 110 55.5
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 7.7e-07 58.2 106 40.6
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 6.6e-06 55.1 110 53.6


User provided reference genes

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