Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 3.9e-54 214.5 108 100.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 2.1e-31 139.0 108 67.6
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 6.7e-30 134.0 111 67.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.3e-27 124.4 101 63.4
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.6e-23 112.8 115 57.4
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 6.1e-23 110.9 108 57.4
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 3.0e-22 108.6 113 58.4
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.1e-21 106.7 110 56.4
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 7.4e-21 104.0 112 55.4
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 7.4e-21 104.0 115 55.7
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 2.2e-20 102.4 115 53.9
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.2e-20 102.4 115 53.9
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.2e-20 102.4 115 53.9
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.2e-20 102.4 115 53.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.1e-19 100.1 110 54.5
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.5e-18 96.3 111 55.0
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 3.4e-18 95.1 108 53.7
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 4.5e-18 94.7 109 56.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 4.5e-18 94.7 111 51.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.9e-17 92.0 116 50.9
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 3.8e-17 91.7 96 56.2
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 3.8e-17 91.7 105 50.5
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 6.5e-17 90.9 111 53.2
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.1e-16 90.1 110 50.9
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.5e-16 89.0 99 52.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.5e-16 87.8 105 50.5
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 7.2e-16 87.4 105 48.6
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 9.4e-16 87.0 80 56.2
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.1e-15 85.9 82 53.7
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.1e-15 85.9 82 53.7
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.7e-15 85.5 99 50.5
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.7e-15 84.7 118 44.9
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.2e-14 81.3 111 49.5
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 8.8e-14 80.5 108 49.1
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.1e-13 80.1 116 41.4
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 2.6e-13 79.0 87 55.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.3e-13 78.6 104 42.3
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 5.7e-13 77.8 111 45.0
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.7e-13 77.8 110 41.8
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.2e-12 75.9 104 46.2
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.2e-12 75.9 99 45.5
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.8e-12 75.5 106 46.2
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.3e-12 74.3 96 45.8
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.1e-11 73.6 80 55.0
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.4e-11 73.2 73 54.8
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.4e-11 73.2 68 60.3
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.1e-11 72.0 96 44.8
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.1e-11 72.0 96 44.8
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.1e-11 72.0 104 43.3
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.1e-11 72.0 78 50.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 4.1e-11 71.6 104 45.2
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 5.3e-11 71.2 84 53.6
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 7.0e-11 70.9 88 47.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 7.0e-11 70.9 73 53.4
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 7.0e-11 70.9 84 54.8
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 7.0e-11 70.9 84 52.4
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 9.1e-11 70.5 106 46.2
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.6e-10 69.7 104 43.3
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.6e-10 68.9 112 44.6
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.6e-10 68.9 96 41.7
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 3.5e-10 68.6 89 49.4
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 3.5e-10 68.6 89 49.4
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 4.5e-10 68.2 72 55.6
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 5.9e-10 67.8 72 54.2
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 5.9e-10 67.8 89 40.4
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.9e-10 67.8 49 69.4
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 7.7e-10 67.4 112 42.0
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 105 45.7
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 2.2e-09 65.9 77 53.2
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.2e-09 65.9 109 44.0
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.2e-09 65.9 106 45.3
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 3.8e-09 65.1 71 56.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.1e-08 63.5 65 56.9
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 3.2e-08 62.0 98 43.9
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 7.2e-08 60.8 92 40.2
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.2e-07 60.1 91 47.3
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 45 68.9
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.2e-07 60.1 45 68.9
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.6e-07 59.7 95 46.3
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.7e-07 58.9 93 44.1
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 3.6e-07 58.5 70 47.1
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 3.6e-07 58.5 95 41.1
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 3.6e-07 58.5 100 40.0
ClCG10G004500 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.7e-07 58.2 104 39.4
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 4.7e-07 58.2 109 43.1
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 6.1e-07 57.8 101 39.6
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 6.1e-07 57.8 105 41.0
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 6.1e-07 57.8 83 41.0
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 6.1e-07 57.8 95 42.1
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 6.1e-07 57.8 63 52.4
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 8.0e-07 57.4 90 43.3
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 8.0e-07 57.4 93 38.7
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 8.0e-07 57.4 45 71.1
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.4e-06 56.6 103 37.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.4e-06 56.6 79 41.8
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 2.3e-06 55.8 45 57.8
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.3e-06 55.8 96 42.7
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 3.0e-06 55.5 45 64.4
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 3.0e-06 55.5 45 64.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 3.0e-06 55.5 100 39.0
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 4.0e-06 55.1 72 41.7
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 5.2e-06 54.7 103 38.8
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 6.7e-06 54.3 105 41.0
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.7e-06 54.3 62 51.6
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 6.7e-06 54.3 62 51.6
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 8.8e-06 53.9 110 37.3


User provided reference genes

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