Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.3e-114 413.7 204 100.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.5e-102 375.6 203 87.2
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.0e-100 368.2 204 85.8
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 5.2e-100 367.9 205 87.3
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.3e-98 363.2 204 84.8
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.7e-98 361.7 204 84.3
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 3.2e-97 358.6 204 84.8
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 7.0e-97 357.5 204 84.3
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.0e-97 357.5 204 84.3
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.0e-96 355.9 204 83.3
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 6.0e-96 354.4 227 78.4
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.7e-95 352.8 204 82.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 5.6e-94 347.8 204 82.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 5.6e-94 347.8 204 80.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.3e-94 347.4 204 79.9
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.2e-93 346.7 206 82.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 4.7e-93 344.7 204 78.9
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 6.2e-93 344.4 204 78.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.6e-91 339.0 206 78.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.2e-90 335.9 205 80.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.1e-89 333.6 205 78.0
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.4e-89 333.2 203 77.8
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.9e-89 332.8 205 77.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.2e-89 332.0 204 76.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.2e-89 332.0 203 77.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.1e-89 331.6 205 77.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 7.1e-89 330.9 202 75.2
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.2e-88 330.1 204 76.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.5e-88 328.6 205 76.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.5e-88 328.6 205 76.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.0e-88 327.8 204 77.5
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 7.8e-88 327.4 205 76.1
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 1.0e-87 327.0 206 77.2
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.0e-87 327.0 203 76.8
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.0e-87 327.0 207 75.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.7e-87 326.2 203 74.4
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.3e-87 325.9 205 75.6
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 3.9e-87 325.1 204 75.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-87 324.7 204 74.0
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 8.6e-87 323.9 204 75.0
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.5e-86 323.2 204 78.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.9e-86 322.8 205 76.1
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.5e-86 322.4 202 74.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.5e-86 322.4 202 74.8
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-86 322.4 203 75.9
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.3e-86 321.6 204 76.5
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 75.6
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 77.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 9.5e-86 320.5 204 73.5
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.2e-85 320.1 207 74.9
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 75.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.1e-85 319.3 205 75.6
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 3.6e-85 318.5 202 73.8
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 4.7e-85 318.2 204 75.5
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 4.7e-85 318.2 204 76.5
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.1e-84 317.0 204 72.1
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.4e-84 316.6 193 78.2
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.4e-84 316.6 199 74.9
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.8e-84 316.2 203 73.4
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.3e-84 315.8 205 73.7
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 3.1e-84 315.5 199 74.4
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 4.0e-84 315.1 194 76.3
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.2e-84 314.7 204 75.0
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 5.2e-84 314.7 199 75.4
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.2e-83 313.5 199 73.9
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.2e-83 313.5 199 73.9
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.0e-83 312.8 202 74.3
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 71.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 71.4
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 5.8e-83 311.2 203 71.4
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.7e-82 308.5 256 62.1
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 70.9
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 70.4
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 4.9e-82 308.1 199 71.9
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 6.4e-82 307.8 203 70.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 70.4
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 70.9
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 8.4e-82 307.4 204 70.6
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.1e-81 307.0 207 69.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.4e-81 306.6 199 72.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 70.0
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 70.4
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.9e-81 306.2 199 71.4
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 70.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.4e-81 305.8 204 73.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 70.9
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 69.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 69.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 69.0
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 200 72.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 7.1e-81 304.3 205 68.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 70.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 70.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 70.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 70.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.7e-80 302.4 202 69.8
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.7e-80 302.4 205 73.2
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 4.6e-80 301.6 203 69.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 67.8
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 7.8e-80 300.8 196 73.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.7e-79 299.7 202 70.8
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.7e-79 299.7 203 69.5
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 8.6e-79 297.4 199 71.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.1e-78 297.0 209 70.8
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 71.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.9e-78 296.2 213 66.7
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.1e-77 292.7 205 66.3
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.8e-77 292.4 202 69.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.6e-77 292.0 202 69.3
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.2e-77 291.2 204 69.1
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-76 290.4 205 69.3
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 4.0e-76 288.5 206 69.4
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.2e-73 278.5 204 69.1
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.6e-71 271.2 193 66.8
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 9.6e-70 267.3 205 63.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.8e-68 263.1 207 59.4
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.5e-67 260.0 204 58.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.4e-65 253.4 208 58.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-62 243.8 146 78.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.3e-62 242.3 139 83.5
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.1e-57 227.3 214 52.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 4.2e-57 225.3 137 78.1
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.1e-56 223.0 208 54.3
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-56 222.2 141 75.9
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 7.9e-56 221.1 205 59.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.3e-55 219.5 148 75.7
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 5.1e-55 218.4 209 53.1
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.6e-54 214.2 145 73.8
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 9.3e-49 197.6 148 64.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.8e-45 186.0 127 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 6.3e-45 184.9 206 47.1
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.5e-41 171.8 181 54.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 9.7e-30 134.4 194 41.2
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.7e-26 123.6 192 36.5
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 3.8e-26 122.5 99 62.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.8e-26 122.5 135 50.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.5e-25 118.6 77 66.2
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.6e-24 115.9 66 78.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 7.9e-24 114.8 128 45.3
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 6.7e-23 111.7 198 35.9
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.1e-22 110.9 69 75.4
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.8e-18 95.9 63 73.0
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-17 93.2 69 68.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.2e-15 85.5 51 74.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 7.0e-12 75.1 74 54.1
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.2e-10 70.1 118 35.6
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 5.0e-10 68.9 51 62.7
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-09 67.8 50 64.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-09 67.8 50 64.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.2e-09 65.1 78 44.9
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 3.6e-08 62.8 136 38.2
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 6.8e-07 58.5 81 39.5
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 9.8e-06 54.7 42 52.4


User provided reference genes

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