Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 1.9e-187 659.1 341 100.0
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 4.1e-142 508.4 347 79.0
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 5.4e-142 508.1 347 78.7
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 4.3e-139 498.4 342 78.7
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 4.3e-139 498.4 342 78.7
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.7e-125 452.6 343 71.1
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 3.5e-125 452.2 342 71.1
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 5.1e-124 448.4 343 69.7
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.5e-123 446.8 343 69.4
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 5.6e-123 444.9 345 69.3
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.6e-122 443.4 344 69.2
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.3e-119 433.7 343 69.4
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.7e-119 433.3 345 67.8
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 2.4e-118 429.5 344 67.4
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 3.2e-118 429.1 344 68.0
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 9.3e-118 427.6 338 71.3
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 1.7e-116 423.3 341 67.2
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 3.0e-116 422.5 343 68.2
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.9e-115 419.9 344 64.5
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 2.5e-115 419.5 343 66.2
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 5.6e-115 418.3 338 66.6
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.3e-114 417.2 348 66.1
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 4.8e-114 415.2 280 76.1
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.4e-113 412.9 344 65.4
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 3.1e-113 412.5 345 64.9
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 3.1e-113 412.5 343 64.4
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 1.5e-112 410.2 339 65.8
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 2.6e-112 409.5 339 65.8
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 5.8e-112 408.3 339 65.5
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 7.6e-112 407.9 338 64.2
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 9.9e-112 407.5 348 62.9
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 9.9e-112 407.5 348 62.9
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 6.4e-111 404.8 345 64.3
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 8.4e-111 404.4 341 62.8
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 1.4e-110 403.7 339 65.2
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.4e-110 403.7 342 66.1
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 2.4e-110 402.9 342 66.1
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 3.2e-110 402.5 329 66.6
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 4.2e-110 402.1 346 64.7
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 4.2e-110 402.1 345 65.5
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 7.1e-110 401.4 352 62.5
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 1.2e-109 400.6 345 62.3
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 3.5e-109 399.1 348 64.7
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.0e-108 397.5 343 64.4
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 8.7e-108 394.4 351 60.7
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.1e-107 394.0 342 62.0
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 1.9e-107 393.3 344 62.2
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.9e-107 393.3 347 63.1
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 4.3e-107 392.1 345 63.5
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 5.6e-107 391.7 355 60.0
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.3e-106 390.6 342 64.3
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.8e-106 389.4 354 59.9
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 6.2e-106 388.3 344 62.2
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.1e-105 387.5 341 62.2
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 1.4e-105 387.1 340 62.6
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 3.1e-105 386.0 275 76.0
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 3.1e-105 386.0 346 63.0
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 9.0e-105 384.4 295 68.8
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 2.0e-104 383.3 337 62.9
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 8.4e-103 377.9 342 62.0
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.7e-101 372.9 344 60.8
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 3.5e-101 372.5 342 61.1
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 4.6e-101 372.1 346 58.1
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 3.0e-100 369.4 283 68.6
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 3.9e-100 369.0 343 60.6
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 3.9e-100 369.0 277 71.5
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 4.3e-99 365.5 351 57.8
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 6.5e-95 351.7 309 63.4
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 8.4e-95 351.3 275 65.1
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 9.3e-94 347.8 344 58.7
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 2.3e-92 343.2 350 58.9
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 3.0e-92 342.8 345 58.6
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 3.0e-92 342.8 350 58.6
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 8.7e-92 341.3 350 58.3
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.1e-91 340.9 348 57.5
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.3e-91 339.3 350 58.3
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 4.3e-91 339.0 345 57.7
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 5.7e-91 338.6 314 60.5
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 7.4e-91 338.2 344 58.7
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 7.4e-91 338.2 344 58.7
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 1.3e-90 337.4 345 55.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 6.3e-90 335.1 345 59.1
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 1.4e-89 334.0 349 58.2
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.8e-89 333.6 282 60.3
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 1.2e-88 330.9 352 55.4
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.3e-83 312.4 348 56.0
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 1.4e-76 290.8 323 50.8
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 5.1e-76 288.9 302 56.6
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 5.9e-72 275.4 206 69.9
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.0e-63 248.1 285 46.7
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 1.8e-60 237.3 340 45.0
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 6.7e-60 235.3 185 63.8
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 2.2e-55 220.3 211 58.3
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.4e-52 211.1 132 76.5
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 2.2e-47 193.7 270 38.5
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.8e-45 186.8 121 73.6
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 3.2e-33 146.7 286 40.9
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 3.5e-32 143.3 269 35.7
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 7.8e-32 142.1 238 44.1
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 3.3e-30 136.7 116 64.7
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 7.3e-30 135.6 269 32.3
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 1.7e-26 124.4 136 51.5
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 8.3e-26 122.1 127 54.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 9.5e-22 108.6 262 30.5
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 2.7e-16 90.5 282 26.2
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 2.2e-10 70.9 108 37.0
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 2.2e-10 70.9 320 25.3


User provided reference genes

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