Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 1.1e-303 1045.8 541 100.0
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.9e-250 869.0 540 83.9
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 2.9e-246 855.1 542 83.6
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.3e-224 782.3 532 77.8
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.3e-224 782.3 503 79.5
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.3e-224 782.3 536 77.1
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 8.9e-224 780.4 535 75.9
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 3.4e-223 778.5 541 76.7
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 7.6e-223 777.3 531 77.2
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 9.9e-223 776.9 503 78.3
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 9.9e-223 776.9 519 77.5
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 2.2e-222 775.8 544 74.8
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 3.8e-222 775.0 519 76.9
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 2.7e-220 768.8 539 75.5
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 3.0e-219 765.4 516 78.1
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 3.0e-219 765.4 540 74.8
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.1e-216 756.9 523 75.1
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.4e-216 756.5 543 73.3
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 2.4e-216 755.7 468 81.2
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 4.0e-216 755.0 540 73.3
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 1.2e-215 753.4 527 74.6
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 1.3e-214 750.0 536 73.1
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-214 749.6 514 76.5
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 8.4e-214 747.3 541 73.0
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.1e-213 746.9 511 75.7
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 1.9e-213 746.1 543 71.8
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 3.2e-213 745.3 542 72.9
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 4.2e-213 745.0 510 76.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.2e-212 743.4 478 78.0
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 2.1e-212 742.7 468 79.3
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 6.0e-212 741.1 503 75.3
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.9e-211 738.4 541 73.2
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 8.7e-211 737.3 543 71.1
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.1e-210 736.9 543 71.1
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 7.3e-210 734.2 543 70.9
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.8e-208 729.6 540 70.0
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 4.0e-208 728.4 542 71.0
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.2e-207 726.9 494 76.1
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 7.6e-207 724.2 495 74.5
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 2.2e-206 722.6 491 75.6
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 3.8e-206 721.8 559 69.2
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 3.8e-206 721.8 509 71.7
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 6.0e-204 714.5 468 75.4
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 5.1e-203 711.4 481 76.9
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 6.7e-203 711.1 522 70.7
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 3.3e-202 708.8 498 73.5
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 2.8e-201 705.7 533 69.0
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 4.8e-201 704.9 539 67.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 4.8e-201 704.9 460 75.4
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.1e-200 703.7 474 74.7
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 1.8e-200 703.0 489 72.8
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 3.1e-200 702.2 459 76.7
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.0e-199 699.5 460 74.8
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 2.0e-199 699.5 460 74.6
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 3.4e-199 698.7 459 75.4
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 4.5e-199 698.4 525 70.7
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 4.5e-199 698.4 480 73.1
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.3e-198 696.8 460 74.1
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.1e-197 693.7 461 74.8
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 4.2e-197 691.8 442 77.8
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 5.5e-197 691.4 507 68.2
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 1.0e-195 687.2 439 78.4
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 1.0e-195 687.2 515 68.0
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.3e-195 686.0 499 67.9
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 2.1e-193 679.5 522 67.8
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 6.2e-193 677.9 533 64.4
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 8.1e-193 677.6 541 68.9
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.1e-192 677.2 461 71.8
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 2.4e-192 676.0 538 68.2
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 4.0e-192 675.2 461 71.8
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 2.5e-189 666.0 521 67.6
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 3.2e-189 665.6 474 69.8
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.2e-189 665.2 540 64.6
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 5.5e-189 664.8 475 69.5
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 9.3e-189 664.1 486 67.9
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 1.2e-188 663.7 540 64.3
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 2.7e-188 662.5 463 70.8
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 2.7e-188 662.5 540 65.0
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 4.6e-188 661.8 513 65.3
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 7.9e-188 661.0 462 71.4
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 1.3e-187 660.2 459 72.8
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 2.3e-187 659.4 543 64.5
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 9.6e-186 654.1 564 60.5
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 2.5e-181 639.4 536 62.1
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 2.7e-180 636.0 536 61.8
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.6e-177 626.7 536 60.6
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.6e-177 626.7 531 61.0
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 2.2e-177 626.3 437 70.5
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 2.4e-176 622.9 437 70.0
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 2.5e-173 612.8 537 61.6
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 2.8e-169 599.4 441 67.6
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.8e-168 596.7 462 65.8
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 2.0e-162 576.6 523 58.3
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 6.5e-158 561.6 453 60.7
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 2.8e-153 546.2 488 60.2
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 8.2e-153 544.7 473 62.8
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 6.1e-148 528.5 373 71.0
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.6e-146 523.1 484 58.7
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 1.1e-144 517.7 356 69.7
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.8e-139 500.4 344 73.5
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 1.3e-134 484.2 450 51.8
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.5e-133 480.7 405 60.5
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 4.7e-132 475.7 460 50.9
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.5e-130 470.7 465 50.1
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 5.4e-128 462.2 466 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 5.6e-125 452.2 455 49.2
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-121 440.7 417 61.6
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 1.7e-118 430.6 487 45.8
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 3.0e-110 403.3 438 45.9
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 5.3e-75 286.2 465 34.4
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 7.2e-64 249.2 425 34.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 1.2e-58 231.9 385 44.4
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 2.3e-54 217.6 134 76.9
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 3.1e-51 207.2 137 73.0
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 1.7e-44 184.9 145 66.2
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 7.2e-40 169.5 106 81.1
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 4.0e-38 163.7 236 41.1
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 1.6e-34 151.8 468 24.8
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 5.7e-29 133.3 92 69.6
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 2.8e-28 131.0 94 72.3
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.3e-25 121.3 114 63.2
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 2.1e-23 114.8 220 37.3
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.8e-23 114.4 68 82.4
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 5.2e-22 110.2 195 35.9
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 4.4e-21 107.1 220 34.1
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.7e-20 105.1 120 54.2
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 4.0e-14 84.0 80 58.8
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 2.4e-11 74.7 418 22.5
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 3.9e-09 67.4 103 44.7
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 1.6e-07 62.0 61 57.4


User provided reference genes

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