Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 5.0e-221 770.8 383 100.0
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 2.9e-168 595.5 377 77.7
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 1.9e-164 582.8 382 74.6
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 2.3e-157 559.3 391 74.2
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 4.8e-139 498.4 382 68.1
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.3e-128 463.8 371 65.0
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 2.9e-128 462.6 383 63.7
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 1.9e-127 459.9 370 64.1
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 5.5e-127 458.4 377 62.3
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 3.6e-126 455.7 384 62.5
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.0e-125 452.6 370 63.8
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.6e-124 449.5 378 61.1
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 5.7e-124 448.4 384 62.0
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 2.2e-123 446.4 384 62.2
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 2.4e-122 443.0 379 63.3
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.7e-120 436.8 297 72.7
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.1e-119 434.1 341 66.3
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 1.9e-119 433.3 384 59.4
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 8.0e-118 427.9 363 62.0
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 1.0e-117 427.6 408 56.6
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 4.0e-117 425.6 330 62.7
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 4.0e-117 425.6 392 58.4
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 3.7e-115 419.1 378 60.6
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 3.7e-115 419.1 332 63.9
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 6.3e-115 418.3 383 57.4
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 4.1e-114 415.6 374 59.6
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 4.1e-114 415.6 389 57.8
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.2e-113 414.1 327 62.4
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.6e-113 413.7 353 59.8
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 2.0e-113 413.3 376 59.8
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.7e-113 412.9 342 62.9
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 4.5e-113 412.1 375 60.5
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 5.9e-113 411.8 338 63.9
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 7.7e-113 411.4 378 59.0
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.1e-111 407.5 310 68.1
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 1.5e-111 407.1 370 58.1
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 2.5e-111 406.4 317 62.1
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 2.5e-111 406.4 317 62.1
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 7.2e-111 404.8 384 56.5
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.7e-110 402.9 323 62.8
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 3.6e-110 402.5 375 57.1
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 3.6e-110 402.5 371 56.3
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.7e-110 402.1 375 58.9
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 6.1e-110 401.7 374 56.7
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 5.2e-109 398.7 335 60.6
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 6.8e-109 398.3 335 59.4
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 3.4e-108 396.0 293 67.2
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 4.4e-108 395.6 379 53.6
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 4.4e-108 395.6 363 57.9
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 5.7e-108 395.2 387 54.5
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 1.3e-107 394.0 373 56.3
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-107 392.9 418 52.6
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 3.7e-107 392.5 348 58.9
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 4.8e-107 392.1 323 61.0
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 1.4e-106 390.6 380 52.6
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 5.4e-106 388.7 358 56.7
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 7.0e-106 388.3 348 58.9
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 4.5e-105 385.6 388 55.2
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 1.0e-104 384.4 367 55.9
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 8.5e-104 381.3 385 54.3
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 1.1e-103 380.9 333 59.8
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 2.1e-102 376.7 335 57.9
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 2.7e-102 376.3 331 57.7
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 1.0e-101 374.4 339 57.8
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 1.4e-101 374.0 382 54.5
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 2.3e-101 373.2 348 56.9
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 3.0e-101 372.9 395 53.2
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 5.7e-100 368.6 382 53.9
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 5.7e-100 368.6 352 55.1
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.3e-99 367.5 364 53.8
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 2.8e-99 366.3 330 56.7
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 1.4e-98 364.0 280 63.9
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 1.8e-98 363.6 378 54.0
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 3.1e-98 362.8 341 55.1
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 4.5e-97 359.0 384 50.8
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 1.3e-96 357.5 359 53.8
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 1.7e-96 357.1 323 57.9
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 8.6e-96 354.8 344 57.3
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 1.1e-95 354.4 237 71.3
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.1e-95 354.4 331 55.3
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 1.9e-95 353.6 329 54.7
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 7.3e-95 351.7 306 57.8
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 2.8e-94 349.7 372 52.2
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 2.8e-94 349.7 392 49.7
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 4.7e-94 349.0 374 51.9
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.8e-93 347.1 292 59.2
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 3.0e-93 346.3 357 53.5
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 4.0e-93 345.9 378 53.7
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 3.4e-92 342.8 357 53.2
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.3e-91 340.9 387 49.4
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 3.7e-91 339.3 354 53.1
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 2.0e-89 333.6 296 58.4
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 2.3e-88 330.1 363 47.9
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 6.2e-86 322.0 237 67.1
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 3.9e-80 302.8 328 50.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 1.8e-77 293.9 226 64.6
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 5.2e-77 292.4 222 64.4
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 6.8e-77 292.0 362 45.9
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 7.1e-74 282.0 355 42.0
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 8.6e-64 248.4 362 38.4
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 7.3e-63 245.4 189 68.8
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.4e-58 231.1 241 53.1
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 3.2e-58 229.9 262 52.7
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 1.7e-56 224.2 173 65.3
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 2.4e-50 203.8 213 47.9
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 4.3e-47 193.0 268 41.8
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 7.4e-47 192.2 201 47.8
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-44 184.9 293 39.9
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-44 184.9 297 38.7
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 3.4e-44 183.3 308 35.7
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 4.5e-44 183.0 191 50.8
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 1.3e-43 181.4 321 35.8
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.9e-42 177.6 279 40.9
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 9.3e-42 175.3 183 53.0
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 8.7e-40 168.7 145 60.0
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 1.3e-38 164.9 297 35.4
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 6.2e-38 162.5 238 37.0
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 4.0e-37 159.8 153 53.6
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 7.6e-36 155.6 248 37.5
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-34 151.8 258 36.8
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.9e-32 143.3 136 52.9
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 6.9e-29 132.5 270 30.7
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 1.1e-26 125.2 193 40.9
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 4.6e-25 119.8 129 50.4
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 8.2e-22 109.0 125 50.4
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.7e-19 101.3 241 29.5
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 1.4e-10 71.6 63 61.9
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 7.9e-09 65.9 52 55.8
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.3e-08 64.3 52 55.8
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 8.2e-06 55.8 39 61.5


User provided reference genes

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