Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.6e-123 446.0 221 100.0
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.3e-117 426.4 221 94.6
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 6.6e-117 424.1 220 95.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.3e-116 421.8 221 93.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 4.3e-116 421.4 220 94.5
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.6e-116 421.0 221 94.1
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 5.6e-116 421.0 221 93.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.3e-115 419.9 221 93.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.1e-115 419.1 221 92.8
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.8e-115 418.7 221 92.3
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 3.6e-115 418.3 221 93.2
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 4.8e-115 417.9 221 91.9
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 8.1e-115 417.2 221 91.9
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.8e-114 416.0 221 91.0
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.8e-114 416.0 221 91.0
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.4e-114 415.6 221 92.8
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 2.4e-114 415.6 221 92.8
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.4e-114 415.6 221 91.4
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.4e-114 415.6 221 91.9
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.1e-114 415.2 221 92.3
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.1e-114 415.2 221 91.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.0e-114 414.8 221 91.4
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.0e-114 414.8 221 92.3
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.3e-114 414.5 221 90.5
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 5.3e-114 414.5 221 91.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 9.0e-114 413.7 221 92.3
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.0e-114 413.7 221 90.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.2e-113 413.3 221 91.9
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.5e-113 412.9 221 91.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.5e-113 412.9 221 92.3
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.5e-113 412.9 221 91.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.4e-113 411.8 221 91.4
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.4e-113 411.8 221 90.0
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 5.8e-113 411.0 221 91.0
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.6e-113 410.6 221 90.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 7.6e-113 410.6 221 90.0
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 9.9e-113 410.2 221 90.0
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.3e-112 409.8 221 90.0
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.3e-112 409.8 221 90.5
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.7e-112 409.5 221 90.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-112 409.5 219 90.0
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-112 409.5 219 90.0
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-112 409.5 219 90.0
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-112 409.5 219 90.0
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-112 409.5 219 90.0
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.7e-112 409.5 221 89.1
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.2e-112 409.1 221 90.0
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.2e-112 409.1 221 91.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.9e-112 408.7 214 93.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.9e-112 408.7 219 90.9
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.9e-112 407.9 221 89.6
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 4.9e-112 407.9 221 89.6
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.9e-112 407.9 221 91.0
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 6.4e-112 407.5 221 90.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 6.4e-112 407.5 221 91.0
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.1e-111 406.8 221 90.0
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.4e-111 406.4 221 90.5
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.4e-111 406.4 218 90.4
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.4e-111 406.4 221 90.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.4e-111 406.4 219 89.5
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.9e-111 406.0 221 89.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.4e-111 405.6 221 88.2
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.4e-111 405.6 221 90.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 2.4e-111 405.6 221 88.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-111 405.2 219 88.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.2e-111 405.2 221 90.0
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.2e-111 405.2 221 89.1
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.2e-111 404.8 221 89.6
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 89.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.4e-111 404.4 221 90.5
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 7.1e-111 404.1 221 88.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 7.1e-111 404.1 221 89.6
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 7.1e-111 404.1 221 91.0
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 9.3e-111 403.7 219 90.0
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 9.3e-111 403.7 221 89.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.2e-110 403.3 221 90.0
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.2e-110 403.3 221 89.6
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.6e-110 402.9 219 89.5
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-110 402.5 221 89.6
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-110 402.5 221 89.6
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.7e-110 402.1 221 88.7
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.7e-110 402.1 231 86.6
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.7e-110 402.1 221 89.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.5e-110 401.7 226 86.3
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 3.5e-110 401.7 219 89.5
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.5e-110 401.7 221 89.6
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.6e-110 401.4 221 88.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 4.6e-110 401.4 221 89.1
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 6.0e-110 401.0 221 87.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 6.0e-110 401.0 221 90.0
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.0e-109 400.2 221 88.7
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.3e-109 399.8 221 88.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.3e-109 399.1 221 88.7
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.9e-109 398.3 221 88.2
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.1e-109 397.9 218 89.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.1e-109 397.9 218 89.0
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 8.7e-109 397.1 221 88.7
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.3e-108 395.2 219 87.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.3e-108 395.2 221 86.0
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 4.3e-108 394.8 215 88.8
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 5.6e-108 394.4 221 86.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.4e-108 394.0 219 87.2
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 7.4e-108 394.0 221 87.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 9.6e-108 393.7 221 87.3
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-107 393.3 215 87.9
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 4.8e-107 391.3 204 94.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 8.1e-107 390.6 217 86.6
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.1e-107 390.6 221 86.4
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.1e-106 390.2 248 79.0
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 4.0e-106 388.3 219 87.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.3e-106 387.9 221 86.0
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 6.9e-106 387.5 221 86.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.4e-105 385.2 220 86.4
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.2e-104 382.5 221 84.6
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 4.9e-104 381.3 200 93.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.2e-103 378.6 219 82.6
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.6e-102 374.8 234 82.1
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 6.0e-102 374.4 219 82.2
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 7.9e-102 374.0 221 81.9
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.3e-101 373.2 200 90.5
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.7e-101 370.5 221 86.9
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.7e-99 365.2 221 82.4
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.4e-98 362.5 221 82.4
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.5e-96 354.4 192 89.6
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.9e-95 352.8 215 83.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 4.2e-95 351.7 190 89.5
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.0e-94 347.8 221 75.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-93 347.1 192 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.8e-93 346.3 221 75.1
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.1e-92 343.6 190 87.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.5e-92 343.2 182 90.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 9.6e-92 340.5 221 78.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-91 339.3 213 78.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.1e-91 339.3 182 93.4
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 4.8e-91 338.2 182 91.2
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 9.0e-90 334.0 208 81.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.0e-89 332.8 221 70.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 5.0e-88 328.2 222 71.2
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 6.7e-85 317.8 221 68.3
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.8e-82 309.7 174 89.1
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 7.7e-81 304.3 221 75.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.7e-75 285.4 227 68.3
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 6.9e-74 281.2 153 88.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.8e-72 275.4 152 89.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.7e-62 242.7 146 82.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 4.4e-60 235.3 209 63.2
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.5e-57 225.3 121 89.3
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.4e-53 213.8 165 66.1
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-47 193.4 119 76.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 8.0e-46 188.0 158 63.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 8.0e-46 188.0 177 60.5
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.0e-45 185.7 136 72.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 3.8e-40 169.1 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 4.7e-38 162.2 86 87.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.5e-36 154.8 178 48.9
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-34 150.6 96 75.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.0e-28 130.2 196 44.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.7e-27 125.9 170 45.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 4.6e-25 119.0 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 4.6e-25 119.0 66 89.4
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.9e-19 99.8 271 29.9
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.0e-17 92.0 45 91.1
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.7e-16 90.5 158 39.9
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-15 87.4 47 85.1
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-15 86.7 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 9.5e-15 84.7 79 55.7
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-12 77.8 92 50.0
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.2e-11 73.6 103 44.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 5.4e-10 68.9 110 40.0
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.5e-09 66.2 43 79.1
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.7e-08 63.9 57 52.6
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.6e-07 58.2 34 79.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.2e-06 57.8 42 73.8
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.2e-06 57.8 38 73.7
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.1e-06 55.1 40 60.0


User provided reference genes

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